ID: uc002xro.3
GENE: SLC35C2(3)
chr20:44983555-44983761-


(1)
AGO2.ip
(3)
BRAIN
(8)
BREAST
(17)
CELL-LINE
(4)
CERVIX
(5)
HEART
(4)
HELA
(1)
KIDNEY
(6)
LIVER
(3)
OTHER
(19)
SKIN
(1)
TESTES

Sense strand
TGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCTGAACTCGGTGAGCACGTGCCACTCATCCTCCAGAGAGAGGAACCCCGGCACAGGCAGGGCGGAGGCAGGGCAGGGCCGGACCAGACCTGATGGTGCCTGTCCCCCGCCCTGCAGGCCTCCAGAATCCCATCGACACCATGTTCCACCTGCAGCCACTCATGTTC
................................................................................................(((((((((.((((((...((......))..(((....))).)))).)).)))))))))....................................................
............................................................................................93..............................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR040010(GSM532895)
G529N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189784SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577738(Rovira)
total RNA. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGT.................................................23122.0014.00-5.007.00--2.00----2.00-1.00--------------------------------------1.00--1.001.00---1.001.00--------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAG..................................................22114.0014.005.00-----------1.00----1.001.00-1.00---1.00-1.00---------1.00------1.00-------------------1.00-----------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGC....................................................2015.005.00------------------1.00--1.00--------1.00-----------1.00---------------------------1.00----
.............................................................................................CAGGCAGGGCGGAGGCAGGGCAGGGCCGGACCAGACCTGATGGTGCCTGTCCCCCGCCCTGCAGT.................................................654.000.00---4.00-----------------------------------------------------------------------
..............CCCTCACCCAGATGCTCCTGCAGAAG.......................................................................................................................................................................2613.003.003.00--------------------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGC.................................................2313.0014.00----------------------1.00-----------------------------1.00-----------1.00----------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGA.................................................2313.0014.00-------------------------1.00-----------1.00----------------------------1.00--------
...................................AGAAGGCTGAACTCGGTGAG........................................................................................................................................................2012.002.00-----------2.00---------------------------------------------------------------
.....................CCAGATGCTCCTGCAGAAGGCTG...................................................................................................................................................................2312.002.00--------2.00------------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCATT.................................................232.000.00--------------1.00------------------------------------------1.00-----------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGC........................................................................................2212.002.00---------2.00-----------------------------------------------------------------
............................CTCCTGCAGAAGGCTGAACTCGGC...........................................................................................................................................................242.000.00----2.00----------------------------------------------------------------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGCCGGACC..................................................................................2811.001.00---------------1.00-----------------------------------------------------------
..............................................................................................................................GACCTGATGGTGCCTGTCCCCCGCCCTGCAGT.................................................321.000.00-1.00-------------------------------------------------------------------------
...................................AGAAGGCTGAACTCGAATC.........................................................................................................................................................191.000.00----------------------------------------------1.00----------------------------
............................................................................................ACAGGCAGGGCGGAGTCT.................................................................................................181.000.00----------------1.00----------------------------------------------------------
.................................................................................................................................................................................ACCATGTTCCACCTGCAGCC..........2011.001.00----------------------------------------1.00----------------------------------
...........................................................................................................................................................................ATCGACACCATGTTCCACAGT...............211.000.00---------------------------1.00-----------------------------------------------
...........................GCTCCTGCAGAAGGCTGAACTCGGCC..........................................................................................................................................................261.000.00----1.00----------------------------------------------------------------------
......................................................................................................................................................................ATCCCATCGACACCACCA.......................181.000.00---------------------------------------------1.00-----------------------------
.GGCATTCGCTGGACCCTCAC..........................................................................................................................................................................................2011.001.00--------------------------------------1.00------------------------------------
..........................TGCTCCTGCAGAAGGCTGAACTCGGC...........................................................................................................................................................261.000.00-------------1.00-------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGTG................................................2411.0014.00--------------------------------------------------1.00------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAAT.................................................231.000.00-----------------------------------------------------------------1.00---------
.....................CCAGATGCTCCTGCAGAAGG......................................................................................................................................................................2011.001.00-------------------------------------------------1.00-------------------------
...............................................................................................................................................CCCCCGCCCTGCAGGCCCTG............................................201.000.00------1.00--------------------------------------------------------------------
.............................................................................................................................................................................................CTGCAGCCACTCATGTTTTG201.000.00------1.00--------------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCC...................................................2111.005.00-------------------------------------------------------------1.00-------------
...........................GCTCCTGCAGAAGGCTGAACTCGGC...........................................................................................................................................................251.000.00----------------------------------1.00----------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGTAT...............................................2511.0014.00--------------1.00------------------------------------------------------------
.......................AGATGCTCCTGCAGAAGGCTGAACT...............................................................................................................................................................2511.001.00--------------------------------------------1.00------------------------------
................................TGCAGAAGGCTGAACTCGG............................................................................................................................................................1911.001.00-----------------1.00---------------------------------------------------------
..................CACCCAGATGCTCCTGCAGAAGGCTG...................................................................................................................................................................2611.001.00-----------------------------------------------1.00---------------------------
..................CACCCAGATGCTCCTGCAGAAGGC.....................................................................................................................................................................2411.001.00----------------------------1.00----------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGCT................................................2411.0014.00---------------------------------------------------------------------1.00-----
..............................................................................................AGGCAGGGCGGAGGCAGGGCAGGGCCGGGTT..................................................................................311.000.00-------------------------------1.00-------------------------------------------
..............CCCTCACCCAGATGCTCCTGCAGAAGGCTG...................................................................................................................................................................3011.001.00-------------1.00-------------------------------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGTAC...............................................2511.0014.00-----1.00---------------------------------------------------------------------
..................................................GTGAGCACGTGCCACTCATCCTC......................................................................................................................................2311.001.00---------------------------------------1.00-----------------------------------
.........................ATGCTCCTGCAGAAGGCTGAACTCG.............................................................................................................................................................2511.001.00-------------------------------------------------------------------1.00-------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGA....................................................201.000.00-----------------------------------------------------1.00---------------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGCCGGACCA.................................................................................2911.001.00----------------------------------------------------------1.00----------------
........................GATGCTCCTGCAGAAGGCTGAACTCGG............................................................................................................................................................2711.001.00----1.00----------------------------------------------------------------------
.......................AGATGCTCCTGCAGAAGGC.....................................................................................................................................................................1911.001.00------------------------------------------------1.00--------------------------
.................................GCAGAAGGCTGAACTCGGTGAGCACGTGC.................................................................................................................................................2911.001.00--------------------------------------------------------------------1.00------
.....................CCAGATGCTCCTGCAGAAGGCTGAACT...............................................................................................................................................................2711.001.00--------------------------------------------------------------1.00------------
.............ACCCTCACCCAGATGCTCCTGCAG..........................................................................................................................................................................2411.001.00-----------------------------------------1.00---------------------------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGCCGGAAC..................................................................................281.000.00---------------1.00-----------------------------------------------------------
...........................................................................GAGAGAGGAACCCCGCCC..................................................................................................................181.000.00----------------1.00----------------------------------------------------------
...................................................................................................GGGCGGAGGCAGGGCTGG..........................................................................................181.000.00---------------------------------1.00-----------------------------------------
..........................................................................................................................................................................CATCGACACCATGTTCCACCTGCAGCCACT.......3011.001.00--------1.00------------------------------------------------------------------
..................................CAGAAGGCTGAACTCG.............................................................................................................................................................1611.001.00-----------------------------------1.00---------------------------------------
.......................................................................................................................................GTGCCTGTCCCCCGCCCTGCAGTA................................................2411.0014.00-------------------1.00-------------------------------------------------------
.................................................................................................CAGGGCGGAGGCAGGGCAGGGCCGGAC...................................................................................2711.001.00-1.00-------------------------------------------------------------------------
...............................................TCGGTGAGCACGTGCTTG..............................................................................................................................................181.000.00--------------------------------1.00------------------------------------------
..................................CAGAAGGCTGAACTCGGTGAGC.......................................................................................................................................................2211.001.00-----------------------------1.00---------------------------------------------
.................................GCAGAAGGCTGAACTCTG............................................................................................................................................................181.000.00-----------------------1.00---------------------------------------------------
..................................................................................................AGGGCGGAGGCAGGGC.............................................................................................1640.250.25-------------------0.25-------------------------------------------------------
..............................................................................................AGGCAGGGCGGAGGCTCC...............................................................................................1880.120.12--------------------------------------------------------------------------0.12
..............................................................................................AGGCAGGGCGGAGGC..................................................................................................1580.120.12--------------------0.12------------------------------------------------------

Antisense strand
TGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCTGAACTCGGTGAGCACGTGCCACTCATCCTCCAGAGAGAGGAACCCCGGCACAGGCAGGGCGGAGGCAGGGCAGGGCCGGACCAGACCTGATGGTGCCTGTCCCCCGCCCTGCAGGCCTCCAGAATCCCATCGACACCATGTTCCACCTGCAGCCACTCATGTTC
................................................................................................(((((((((.((((((...((......))..(((....))).)))).)).)))))))))....................................................
............................................................................................93..............................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR040010(GSM532895)
G529N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189784SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577738(Rovira)
total RNA. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
........................................................................................................................................................................................TCCACCTGCAGCCACTCCTG... 203.000.00-------3.00-------------------------------------------------------------------
........................................................................................................................................................TGCAGGCCTCCAGAAATC..................................... 181.000.00--------------------------------------------------------1.00------------------
.................................GCAGAAGGCTGAACTCGGT........................................................................................................................................................... 191.000.00------1.00--------------------------------------------------------------------
.........................................................................................................................................GCCTGTCCCCCGCCCTG..................................................... 1730.330.33------------------------------------------------------------------------0.33--
...........................................................................................CACAGGCAGGGCGGAG.................................................................................................... 1640.250.25-------------------------------------------------------------------------0.25-
..................................................................................................................................TGATGGTGCCTGTCC.............................................................. 1580.250.25-----------------------------------------------------------------------0.25---
..................................................................................................................................TGATGGTGCCTGTCCAT............................................................ 170.120.00-----------------------------------------------------------------------0.12---