ID: uc002seu.9
GENE: ARHGAP25(9)
chr2:69052919-69053168+


(2)
AGO2.ip 		(12)
B-CELL 		(1)
BRAIN 		(11)
BREAST 		(15)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(1)
UTERUS

Sense strand
TGACAAATGAGGGGCTCAGAAGTACTGTGGGGATTCAGGTTTTCTGGGACATCTTCATGTGGGAAGAGGGACATAGCTGAGAGGTTGGATAAGGGTCTTGTGATTTGAAAGGAAAATGAGCAGCAGGTTGTGAGCAAGGGGGAAGGAAGAGTCTAGAATGAATGCCACATTCTTTCATTCTTTTCTTTCCTTCCTTGTAGCCTTGAGAAGGAAAATTATGACGTTTGGGCTAAAGTGGTGAGGCTCAATG
.....................................................................................................................................((((((((((((((((((....(((.(((((...))))).)))...)))))))))))).))))))....................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189784SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR040015(GSM532900)
G623T. (cervix)		SRR343334SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040012(GSM532897)
G648N. (cervix)
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTGTAG..................................................23124.0024.001.001.00------2.00---1.00----1.00--1.00-1.001.002.00--1.001.00---1.00---1.001.00-----1.00--1.00----1.00--1.00------1.00----1.001.00------1.00--
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTGT....................................................2118.008.00-1.00--------1.00--------1.00---1.00----1.00-----------1.00---------1.00---------1.00----------------
..........................................................................................................................................GGGGAAGGAAGAGTCTAGAATGA.........................................................................................2316.006.001.00----4.00----------------------------------------------------------1.00------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTGTA...................................................2215.005.00------2.00---------------1.00-------1.00------------------------------------------1.00---
................................................................................................................................................................................ATTCTTTTCTTTCCTTCCTTGTAG..................................................2414.004.00--------1.00---1.00------1.00-------------1.00-------------------------------------------
.............................................................................................................................................................................................................AGAAGGAAAATTATGACGTTTG.......................2214.004.00----4.00------------------------------------------------------------------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTGTAGA.................................................2413.0024.00----------------1.00------------------------1.00-----------1.00-----------------------
................................................................................................................................................................................ATTCTTTTCTTTCCTTCCTTGA....................................................2213.002.00-------3.00---------------------------------------------------------------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTGTAA..................................................2313.005.00----------1.00----1.00----------------------------------------------1.00--------------
...........................................................................................................................................GGGAAGGAAGAGTCTAGAATGA.........................................................................................2213.003.00-------------1.00----1.00---------------1.00------------------------------------------
....................................................................................................................TGAGCAGCAGGTTGTATAG...................................................................................................................193.000.00--3.00--------------------------------------------------------------------------
................................................................................................................................................................................ATTCTTTTCTTTCCTTCCTTGT....................................................2213.003.00-1.00----------------------------------------------1.00--------1.00-------------------
.........................................................................................................................................GGGGGAAGGAAGAGTCTAGAATG..........................................................................................2313.003.00--------------2.00----------1.00---------------------------------------------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTGTAT..................................................2312.005.00----------1.00---------1.00--------------------------------------------------------
............................................................................................................................................................................................................................ACGTTTGGGCTAAAGTGT............182.000.00-----------------------------2.00-----------------------------------------------
..........................................................................................................................................GGGGAAGGAAGAGTCTAGAATG..........................................................................................2212.002.001.00--------------------------1.00-------------------------------------------------
.......................................................................................................................................................................CATTCTTTCATTCTTTTCTTTTTTT..........................................................252.000.00--------------------------1.00-------------------------------------------1.00------
................................................................................................................................................................................ATTCTTTTCTTTCCTTCCTTG.....................................................2112.002.00-2.00---------------------------------------------------------------------------
..........................................................................................................................................GGGGAAGGAAGAGTCTAGAAA...........................................................................................212.000.00--------------------------------------1.00----------1.00---------------------------
.......................................................................................................................................AAGGGGGAAGGAAGAGTCTAGA.............................................................................................2212.002.00-------------1.00------------------------------1.00--------------------------------
.............................................................................................................................................GAAGGAAGAGTCTAGAATGAA........................................................................................2112.002.00---------------------2.00-------------------------------------------------------
.......................................................................................................................................AAGGGGGAAGGAAGAGTCTAGAA............................................................................................2312.002.00------------------1.00--------------------------------------------------1.00-------
......................................................................................................................................................................................................................ATTATGACGTTTGGGCTAA.................1911.001.001.00----------------------------------------------------------------------------
............................................................................................................AAGGAAAATGAGCAGCAGGTTGT.......................................................................................................................2311.001.00----------------------------------------------------------1.00------------------
...........................................................................................................................................................................CTTTCATTCTTTTCTTTAAG...........................................................201.000.00-----------------------------------------------1.00-----------------------------
....................................................................................................................................................................................................................AAATTATGACGTTTGGGCA...................191.000.001.00----------------------------------------------------------------------------
............................................................................................................................................GGAAGGAAGAGTCTAGGCTG..........................................................................................201.000.00-----------------1.00-----------------------------------------------------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTGTAGT.................................................2411.0024.00------------------------------------------------------------------------1.00----
.......................................................................................................................................................................CATTCTTTCATTCTTTTCTTCATG...........................................................241.000.00--------------------------1.00--------------------------------------------------
.................................................................................................................................................................................................................GGAAAATTATGACGTTTGGGC....................2111.001.001.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................AAGGAAAATTATGACGTTTGG......................2111.001.00-----------------------------------------------------------------------1.00-----
.............................................................................................................................................................................................................AGAAGGAAAATTATGACGTT.........................2011.001.001.00----------------------------------------------------------------------------
.............................................................................................................................................................................................................AGAAGGAAAATTATGACGTTTGG......................2311.001.00----------------1.00------------------------------------------------------------
..........................................................................................................................................GGGGAAGGAAGAGTCTAGTTAG..........................................................................................221.000.00--------------------------------------------------------------------1.00--------
...............................................................................................................................................................................CATTCTTTTCTTTCCTTCCTTG.....................................................2211.001.00-----------------------------------1.00-----------------------------------------
......................................................................................................................................................................................................................ATTATGACGTTTGGGCTAAA................2011.001.001.00----------------------------------------------------------------------------
....................................................................................................................TGAGCAGCAGGTTGTATCG...................................................................................................................191.000.00----------------------------------------------------1.00------------------------
............................................................................................................................................GGAAGGAAGAGTCTAGGCT...........................................................................................191.000.00---------------------------------------------------------------------------1.00-
.........................................................................................................................................................................................................................ATGACGTTTGGGCTAAAGTGGTGAGGC......2711.001.00---------------1.00-------------------------------------------------------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTGTATC.................................................2411.005.00-----------------------------------------------------------------1.00-----------
................................................................................................................................................................................ATTCTTTTCTTTCCTTCCTTGTAGT.................................................2511.004.00-------------------------------------------------------1.00---------------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTA......................................................191.000.00-------------------------1.00---------------------------------------------------
........................................................................................................................................AGGGGGAAGGAAGAGTCTAGA.............................................................................................2111.001.00--------------------------------------------------------1.00--------------------
.............................................................................................................................................................................TTCATTCTTTTCTTTCCTTCCTTGT....................................................2511.001.00-----------------------------------------------------------1.00-----------------
..................................................................................................................AATGAGCAGCAGGTTGTGTGC...................................................................................................................211.000.00---------------------------------------1.00-------------------------------------
............................................................................................................................AGGTTGTGAGCAAGGGGCT...........................................................................................................191.000.00-------------------------------1.00---------------------------------------------
.......................................................................................................................................AAGGGGGAAGGAAGAGTCTAGAATG..........................................................................................2511.001.00------1.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................TTTGGGCTAAAGTGGTGAG........1911.001.001.00----------------------------------------------------------------------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCTTG.....................................................2040.500.50-0.25--------------------------------------------------------------------------0.25

Antisense strand
TGACAAATGAGGGGCTCAGAAGTACTGTGGGGATTCAGGTTTTCTGGGACATCTTCATGTGGGAAGAGGGACATAGCTGAGAGGTTGGATAAGGGTCTTGTGATTTGAAAGGAAAATGAGCAGCAGGTTGTGAGCAAGGGGGAAGGAAGAGTCTAGAATGAATGCCACATTCTTTCATTCTTTTCTTTCCTTCCTTGTAGCCTTGAGAAGGAAAATTATGACGTTTGGGCTAAAGTGGTGAGGCTCAATG
.....................................................................................................................................((((((((((((((((((....(((.(((((...))))).)))...)))))))))))).))))))....................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189784SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR040015(GSM532900)
G623T. (cervix)		SRR343334SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040012(GSM532897)
G648N. (cervix)
..................................................................................................................AATGAGCAGCAGGTTCTTG..................................................................................................................... 196.000.00--1.00------3.00-2.00-----------------------------------------------------------------
.................................................................................................................................................................................TTCTTTTCTTTCCTTCCATC..................................................... 205.000.00---5.00-------------------------------------------------------------------------
..............................................................................................................................................................................TCATTCTTTTCTTTCGAAG......................................................... 191.000.00------------------------------------------1.00----------------------------------
...............................................................................AGAGGTTGGATAAGGGTCTTGTGATTT................................................................................................................................................ 2711.001.00---------------------------------------------1.00-------------------------------
.......................................................................................................................................................................................TCTTTCCTTCCTTGTAGTG................................................ 191.000.00--1.00--------------------------------------------------------------------------
...............TCAGAAGTACTGTGGTC.......................................................................................................................................................................................................................... 171.000.00---------------------------------------------------------------1.00-------------