ID: uc002ozy.0
GENE: TOMM40
chr19:45394522-45394713+


(3)
AGO2.ip 		(6)
B-CELL 		(5)
BRAIN 		(9)
BREAST 		(37)
CELL-LINE 		(7)
CERVIX 		(8)
HELA 		(3)
LIVER 		(1)
OTHER 		(14)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGCGCACGGGGTGGGAGCGGAGCCCAGGCCGGGAGCAGGCGCCGCCGCCAGTGAGAACCGGGGCCGGAGCCGGGTGCGGATTTGCTGGGGCTGAGTCGGGGGCGCGCGGGCCCTGACCTCTGCCCTCTGACCTCTCCCCTAGCAGGCGACCATGGGGAACGTGTTGGCTGCCAGCTCGCCGCCCGCAGGGCC
...........................................................................((....(((((((((..((((((((((.(((.(((......))).))))))))))).))..))))))))))).............................................
..........................................................................75........................................................................149.........................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM532880(GSM532880)
G659T. (cervix)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038856(GSM458539)
D11. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040036(GSM532921)
G243N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR343335TAX577579(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040010(GSM532895)
G529N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................CTGCCCTCTGACCTCTCCCCTAG..................................................23110.0010.00---6.00--1.00---------------------------------1.00----------1.00-----------------1.00------------------------
..................................................GTGAGAACCGGGGCCGGAGCCGGGTGCGGATTTGCTGGGGCTGAGTCGGGGGCGCGCGGGCCCTGACCTCTGCCCTCTGACCTCTCCCCTAG..................................................9218.008.00--8.00-------------------------------------------------------------------------------------------
..........................................................................................................................CCCTCTGACCTCTCCCCTAGCAG...............................................2317.007.00-2.00-----------------1.00---------1.00--------1.00-------------------1.00------1.00----------------------------
...............................................................................ATTTGCTGGGGCTGAGTCGG.............................................................................................2016.006.00-6.00--------------------------------------------------------------------------------------------
...............................................................................ATTTGCTGGGGCTGAGTCGGGGG..........................................................................................2315.005.004.00-----------------------------------------1.00---------------------------------------------------
.......................................................................................................................CTGCCCTCTGACCTCTCCCCTAGT.................................................2415.0010.00----------------2.00---1.00----------1.00--------------------1.00-----------------------------------------
........................CAGGCCGGGAGCAGGCGCCGCCG.................................................................................................................................................2315.005.004.00-----------------1.00---------------------------------------------------------------------------
...........................................................................................................................CCTCTGACCTCTCCCCTAGCAGT..............................................2314.003.00----3.00-------------------------------------------------------------------1.00---------------------
..............................................GCCAGTGAGAACCGGGGC................................................................................................................................1813.003.00--------3.00-------------------------------------------------------------------------------------
................................................................................TTTGCTGGGGCTGAGTCGGGGG..........................................................................................2213.003.003.00---------------------------------------------------------------------------------------------
..................................................GTGAGAACCGGGGCCGGAGC..........................................................................................................................2013.003.00-1.00---2.00----------------------------------------------------------------------------------------
...........................................................................................................................CCTCTGACCTCTCCCCTAGCAG...............................................2213.003.00--------------------------------------------------------1.00---------1.00---------1.00-----------------
.................................................................................TTGCTGGGGCTGAGTCGGAGA..........................................................................................2112.002.00-------2.00--------------------------------------------------------------------------------------
.......................................................................................................................CTGCCCTCTGACCTCTCCCCTAT..................................................2312.001.002.00---------------------------------------------------------------------------------------------
.................................................................................TTGCTGGGGCTGAGTCGG.............................................................................................1812.002.00-------------2.00--------------------------------------------------------------------------------
...................................................................................GCTGGGGCTGAGTCGGGGGC.........................................................................................2012.002.00-----2.00----------------------------------------------------------------------------------------
..................................................................................TGCTGGGGCTGAGTCGGGGGC.........................................................................................2112.002.00----2.00-----------------------------------------------------------------------------------------
.....ACGGGGTGGGAGCGGAGCC........................................................................................................................................................................1921.501.50---------------1.00-----------------------------------------------------------------------0.50------
..........................................................CGGGGCCGGAGCCGGGT.....................................................................................................................1721.501.50-----------1.50----------------------------------------------------------------------------------
..................................................GTGAGAACCGGGGC................................................................................................................................1431.331.33---------------------------------------------------------------------------------0.67------0.330.33----
..................................................................................TGCTGGGGCTGAGTCGGGGGCGCGCG....................................................................................2611.001.00------------------------------------------------------------------------------1.00---------------
....................................................................................CTGGGGCTGAGTCGGGGGCGCG......................................................................................2211.001.00----------------------------1.00-----------------------------------------------------------------
..............................................GCCAGTGAGAACCGGGGCCGG.............................................................................................................................2111.001.00---------------------1.00------------------------------------------------------------------------
..............................................................................................................................CTGACCTCTCCCCTAGAA................................................181.000.00---------------------------------1.00------------------------------------------------------------
........................................................................................................................TGCCCTCTGACCTCTCCCCTAGA.................................................2311.001.00----------------------------------------------------------------1.00-----------------------------
..................................................GTGAGAACCGGGGCCGGAGCCGGGTGCGGATTTGCTGGGGCTGAGTCGGGGGCGCGCGGGCCCTGACCTCTGCCCTCTGACCTCTCCCCTAGA.................................................9311.008.00-----------------------1.00----------------------------------------------------------------------
...........................................................................................................................CCTCTGACCTCTCCCCTAG..................................................1911.001.00---1.00------------------------------------------------------------------------------------------
......................................................................CGGGTGCGGATTTGCTGGGG......................................................................................................2011.001.00-1.00--------------------------------------------------------------------------------------------
................................................CAGTGAGAACCGGGGCCGGAGCCGG.......................................................................................................................2511.001.00------------1.00---------------------------------------------------------------------------------
..........................................................................................................................CCCTCTGACCTCTCCCCTATCAT...............................................231.000.00----------------------1.00-----------------------------------------------------------------------
...........................................................................................................................CCTCTGACCTCTCCCCTAGCCGT..............................................231.000.00---------------------------------------------------------------------------1.00------------------
..............................................................................GATTTGCTGGGGCTGAGTCGGG............................................................................................2211.001.00-------------------------------------------------------------------------1.00--------------------
..........................................................................................................................CCCTCTGACCTCTCCCCTAGCCG...............................................231.000.00------------------------------------------------------1.00---------------------------------------
..................................................................GAGCCGGGTGCGGATTTGCT..........................................................................................................2011.001.00-------------------------------------------------------1.00--------------------------------------
.........................................................................................................................................................GGGGAACGTGTTGGCTGC.....................1811.001.00--------------------------------------------------------------------------------1.00-------------
......................CCCAGGCCGGGAGCAGGCGCCG....................................................................................................................................................2211.001.00------------------1.00---------------------------------------------------------------------------
........................................................ACCGGGGCCGGAGCCGGGGA....................................................................................................................201.000.00------1.00---------------------------------------------------------------------------------------
...........................................GCCGCCAGTGAGAACCGG...................................................................................................................................1811.001.00---------------------------------------1.00------------------------------------------------------
.......................CCAGGCCGGGAGCAGGCGCCGCCGCAC..............................................................................................................................................271.000.00--------------------------------------------------------------------1.00-------------------------
......................................................................................................................................................CATGGGGAACGTGTTGGCTGCCA...................2311.001.00-------------------------------------------1.00--------------------------------------------------
...................................................TGAGAACCGGGGCCGGAGCC.........................................................................................................................2011.001.00------------1.00---------------------------------------------------------------------------------
..................................................................................................................................................CGACCATGGGGAACGTGTTGGCTGCC....................2611.001.00-------------------1.00--------------------------------------------------------------------------
.........................................................................GTGCGGATTTGCTGGGGCTGA..................................................................................................2111.001.00-----1.00----------------------------------------------------------------------------------------
.GCGCACGGGGTGGGATTAC............................................................................................................................................................................191.000.00----------------------------------1.00-----------------------------------------------------------
.......................................................................................................................CTGCCCTCTGACCTCTCCCCTAGA.................................................2411.0010.00--------------------1.00-------------------------------------------------------------------------
............................................................................CGGATTTGCTGGGGCTG...................................................................................................1711.001.00---------1.00------------------------------------------------------------------------------------
...............AGCGGAGCCCAGGCCGGGAGCAGGCGC......................................................................................................................................................2721.001.00--------------------------------------------1.00-------------------------------------------------
.GCGCACGGGGTGGGAGGC.............................................................................................................................................................................181.000.00-----------------------------------------------------------------------1.00----------------------
..............................GGGAGCAGGCGCCGCCATGG..............................................................................................................................................201.000.00-------------------------------------1.00--------------------------------------------------------
.......................................................................................................................CTGCCCTCTGACCTCTCCCCTA...................................................2211.001.00-------------------------------------------------------------1.00--------------------------------
......................................................................CGGGTGCGGATTTGCTGG........................................................................................................1811.001.00----------1.00-----------------------------------------------------------------------------------
........................CAGGCCGGGAGCAGGCGCCGC...................................................................................................................................................2111.001.00----------------------------------------------1.00-----------------------------------------------
....................................................................................CTGGGGCTGAGTCGGGGGC.........................................................................................1911.001.00-----------------------------------------------------------1.00----------------------------------
.................................................................................TTGCTGGGGCTGAGTCGGGGAAA........................................................................................231.000.00----------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................AGGCGACCATGGGGAAC................................1711.001.00-----------------1.00----------------------------------------------------------------------------
..........................................................................................................................................................GGGAACGTGTTGGCTGCCAGC.................2111.001.00-1.00--------------------------------------------------------------------------------------------
.............................................CGCCAGTGAGAACCGGGGC................................................................................................................................1911.001.00-------------------------1.00--------------------------------------------------------------------
....................................................................................................................CCTCTGCCCTCTGACCTCTCCCCTAGCAG...............................................2911.001.00------------------------------------------------------------1.00---------------------------------
.................................................................................TTGCTGGGGCTGAGTCGGGAA..........................................................................................211.000.00-----------------------------------------------------1.00----------------------------------------
........................................GCCGCCGCCAGTGAGAACCGGGGCCGGAGCCGG.......................................................................................................................3311.001.00---------1.00------------------------------------------------------------------------------------
.............................................................................................................................................................AACGTGTTGGCTGCCAGCT................1911.001.00-------------------------------------------------------------------1.00--------------------------
.......GGGGTGGGAGCGGAGCCCAGGCCGGGAGCAG..........................................................................................................................................................3121.001.00---------------------------------------------------------1.00------------------------------------
..........................................................................................................................................................GGGAACGTGTTGGCTGCCAGCTCG..............2411.001.00------------------------------------------------1.00---------------------------------------------
..................................................GTGAGAACCGGGGCCGGT............................................................................................................................181.000.00-----1.00----------------------------------------------------------------------------------------
.........................AGGCCGGGAGCAGGCGCCGCCGCCAGT............................................................................................................................................2711.001.00--------------------------------------------------------------------------1.00-------------------
.....ACGGGGTGGGAGCGGTA..........................................................................................................................................................................171.000.00---------------------------1.00------------------------------------------------------------------
.......................................................................................................................CTGCCCTCTGACCTCTCCCCTAGTT................................................2511.0010.00----1.00-----------------------------------------------------------------------------------------
....................................................................................CTGGGGCTGAGTCGGGGGCGCGCGT...................................................................................251.000.00----1.00-----------------------------------------------------------------------------------------
........................................................ACCGGGGCCGGAGCCGGGTGCGGATTTG............................................................................................................2811.001.00-----------------------------------------1.00----------------------------------------------------
.......................................................................................................................CTGCCCTCTGACCTCTCCCCTTTA.................................................241.000.00---1.00------------------------------------------------------------------------------------------
....................................AGGCGCCGCCGCCAGTGAGAACCGGGGCCGGAG...........................................................................................................................3311.001.00---------------------------------------------1.00------------------------------------------------
..................................................GTGAGAACCGGGGCCGGAGCCGGGTGCGGATTTGCTGGGGCTGAGTCGGGGGCGCGCGGGCCCTGACCTCTGCCCTCTGACCTCTCCCCTATAA................................................941.000.00--1.00-------------------------------------------------------------------------------------------
.......................................................................................................................CTGCCCTCTGACCTCTCCCCTATA.................................................2411.001.00---1.00------------------------------------------------------------------------------------------
...............................................................................................................................................................CGTGTTGGCTGCCAGCTCGC.............2011.001.00--------------------------1.00-------------------------------------------------------------------
...........................GCCGGGAGCAGGCGCCGC...................................................................................................................................................1811.001.00--------------1.00-------------------------------------------------------------------------------
..........................................................................................................................................................GGGAACGTGTTGGCTAAA....................181.000.00-----------------------------------------------------------------------------1.00----------------
........................................................................................................................TGCCCTCTGACCTCTCCCCTAG..................................................2211.001.00------------------------------------1.00---------------------------------------------------------
................................................................................................................................................GGCGACCATGGGGAACGTGTTGGC........................2411.001.00------------------------1.00---------------------------------------------------------------------
.............................CGGGAGCAGGCGCCGCCG.................................................................................................................................................1811.001.00-----------------------------------------------1.00----------------------------------------------
.......................................................AACCGGGGCCGGAGCCGGGTGCGGA................................................................................................................2511.001.00---------------------------------------------------------------1.00------------------------------
..................................................GTGAGAACCGGGGCCGGAGCCGGGTGCGGATTTGCTGGGGCTGAGTCGGGGGCGCGCGGGCCCTGACCTCTGCCCTCTGACCTCTCCCCTAGCAG...............................................9511.001.00--------------------------------1.00-------------------------------------------------------------
.............................CGGGAGCAGGCGCCGCC..................................................................................................................................................1711.001.00-----------1.00----------------------------------------------------------------------------------
...................................................................................................GGGCGCGCGGGCCCTGGC...........................................................................181.000.00-----------------1.00----------------------------------------------------------------------------
..........................................................................................................................................................GGGAACGTGTTGGCTATTA...................191.000.00-------------------------------------------------1.00--------------------------------------------
......................................................................................................................................................................GCTGCCAGCTCGCCGCCCG.......1911.001.00------------------------------1.00---------------------------------------------------------------
............................................................................CGGATTTGCTGGGGCTGAGTCGGG............................................................................................2411.001.00--------------1.00-------------------------------------------------------------------------------
..................................................................GAGCCGGGTGCGGATTT.............................................................................................................1711.001.00----------------------------------------------------------------------1.00-----------------------
..........................................................CGGGGCCGGAGCCGGCGG....................................................................................................................181.000.00--------------------------------------------------------------1.00-------------------------------
...................................................................................GCTGGGGCTGAGTCGGGGGCGCGCGGGCCCTG.............................................................................3211.001.00---------------1.00------------------------------------------------------------------------------
.....ACGGGGTGGGAGCGGAGCCCAGGCCGGGAGCAG..........................................................................................................................................................3320.500.50-----------------------------------------------------------------------------------0.50----------
.........GGTGGGAGCGGAGCCCAGGCCGGGAGCAGGCGC......................................................................................................................................................3320.500.50---------0.50------------------------------------------------------------------------------------
...GCACGGGGTGGGAGCGGAGC.........................................................................................................................................................................2020.500.50----------0.50-----------------------------------------------------------------------------------
...GCACGGGGTGGGAGCGGAG..........................................................................................................................................................................1920.500.50--------------------------------------------------------------------------------------0.50-------
.....ACGGGGTGGGAGCGGAGCCCAGGCCG.................................................................................................................................................................2620.500.50------------------------------------------------------------------------------------0.50---------
.......GGGGTGGGAGCGGAGCCCAGG....................................................................................................................................................................2120.500.50---------------------0.50------------------------------------------------------------------------
.......................................................................................................................CTGCCCTCTGACCTCTCCCC.....................................................2020.500.50----------------------------------------------------------------------------------0.50-----------
......................CCCAGGCCGGGAGCAGGCGC......................................................................................................................................................2020.500.50-------------------------------------------------------------------------------------0.50--------
......CGGGGTGGGAGCGGA...........................................................................................................................................................................1530.330.33------0.33---------------------------------------------------------------------------------------
...............................................................................................TCGGGGGCGCGCGGG..................................................................................1550.200.20------------------------------------------------------------------------------------------0.20---
.........................AGGCCGGGAGCAGGCGCC.....................................................................................................................................................1860.170.17-------------------------------------------------------------------------------------------0.17--

Antisense strand
GGCGCACGGGGTGGGAGCGGAGCCCAGGCCGGGAGCAGGCGCCGCCGCCAGTGAGAACCGGGGCCGGAGCCGGGTGCGGATTTGCTGGGGCTGAGTCGGGGGCGCGCGGGCCCTGACCTCTGCCCTCTGACCTCTCCCCTAGCAGGCGACCATGGGGAACGTGTTGGCTGCCAGCTCGCCGCCCGCAGGGCC
...........................................................................((....(((((((((..((((((((((.(((.(((......))).))))))))))).))..))))))))))).............................................
..........................................................................75........................................................................149.........................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM532880(GSM532880)
G659T. (cervix)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038856(GSM458539)
D11. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040036(GSM532921)
G243N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR343335TAX577579(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040010(GSM532895)
G529N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..................GGAGCCCAGGCCGGGACG............................................................................................................................................................ 181.000.00--------------------------------------------------1.00-------------------------------------------
........................................................ACCGGGGCCGGAGCCGGGGGA................................................................................................................... 211.000.00------1.00---------------------------------------------------------------------------------------
..................................................................................................................GACCTCTGCCCTCTGACTGT.......................................................... 201.000.00-------------------------------------------------------------------------------1.00--------------
..............................................................................................................CCCTGACCTCTGCCCTCTGACCTCTCCCCT.................................................... 3011.001.00-----------------------------------1.00----------------------------------------------------------
................GCGGAGCCCAGGCCGGGTC............................................................................................................................................................. 191.000.00-------1.00--------------------------------------------------------------------------------------
.GCGCACGGGGTGGG................................................................................................................................................................................. 1490.110.11--------------------------------------------------------------------------------------------0.11-
................................................................................................................CTGACCTCTGCCCTCTG............................................................... 17100.100.10---------------------------------------------------------------------------------------------0.10