ID: uc002ozx.4
GENE: TOMM40(4)
chr19:45397089-45397267+


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(8)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(1)
FIBROBLAST 		(4)
HEART 		(2)
HELA 		(6)
LIVER 		(1)
OTHER 		(11)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAGGTGAGTGGGGCACGGAGGCTGCTGCTCCCCTCGGCCACCGTGAGCAGGGAGCCGCCCTCACACCCCCTCCTCTCCACAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGG
..................................................(((((.((((....((((..((.((((((((((.......))))..)))))).))))))....))))....))).))....................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR038862(GSM458545)
MM472. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577579(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR038863(GSM458546)
MM603. (cell line)		SRR189782GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		TAX577741(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR343335
...................................................TGAGTGGGGCACGGAGGCTGCT..........................................................................................................2215.005.00---1.001.001.00-------1.00------------1.00------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGA........................................................................................................2415.003.00-2.001.00----1.00-------------1.00-----------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTG.........................................................................................................2313.003.001.00------------------------------1.00-----1.00-------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGT........................................................................................................2413.003.00---2.00-----------------------1.00-----------------------------------
...................................................TGAGTGGGGCACGGAGGCTGA...........................................................................................................2113.001.001.001.00----1.00--------------------------------------------------------
.....................................................................................................CCGCCCTCACACCCCCTCCTC.........................................................2112.002.00----------2.00----------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGT...........................................................................................................2112.001.00-----------1.00---1.00-----------------------------------------------
.............................................................................................................................................AAGTTTGTGAACTGGCAGGGG.................212.000.00-----2.00---------------------------------------------------------
.....................................................................................................CCGCCCTCACACCCCCTCCTCT........................................................2212.002.00---------2.00-----------------------------------------------------
........................................................GGGGCACGGAGGCTGCTGCTC......................................................................................................2112.002.00--------------2.00------------------------------------------------
.......................................................TGGGGCACGGAGGCTGCTGCTGA.....................................................................................................231.000.00----1.00----------------------------------------------------------
.......................................................................................................................................CAGTCGAAGTTTGTGAACTGGCAGGTTGAC..............301.000.00------------------1.00--------------------------------------------
...........................................................................................................................................CGAAGTTTGTGAACTGGCAGGG..................221.000.00-------------------1.00-------------------------------------------
....................................................................................................................................................TGAACTGGCAGGTGGAAA.............181.000.00------------------------------------------1.00--------------------
.....................................................AGTGGGGCACGGAGGCTGCTGAA.......................................................................................................231.000.00------------1.00--------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTG............................................................................................................2011.001.00--------------------------------1.00------------------------------
...................................................TGAGTGGGGCACGGAGGCTTTA..........................................................................................................2211.001.00--1.00------------------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGG...........................................................................................................2111.001.00-----------1.00---------------------------------------------------
...................................................TGAGTGGGGCACGGAG................................................................................................................1611.001.00------1.00--------------------------------------------------------
..............................................................CGGAGGCTGCTGCTCCCCTCGGCCATA..........................................................................................271.000.00-----------------------------1.00---------------------------------
.......................................................TGGGGCACGGAGGCTGCTGAA.......................................................................................................211.000.00-1.00-------------------------------------------------------------
..........................................................GGCACGGAGGCTGCTGCT.......................................................................................................1811.001.00-----------------------1.00---------------------------------------
.....................................................AGTGGGGCACGGAGGCTGCTGT........................................................................................................221.000.00-------------------------1.00-------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGTAA.........................................................................................................2311.001.00----1.00----------------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGC...........................................................................................................2111.001.001.00--------------------------------------------------------------
...................................................TGAGTGGGGCACGGAGG...............................................................................................................1711.001.001.00--------------------------------------------------------------
..................................................GTGAGTGGGGCACGGAGGCTGCTG.........................................................................................................2411.001.00--------1.00------------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGCAAA.....................................................................................................271.000.00------------------------1.00--------------------------------------
...................................................TGAGTGGGGCACGGAGGCT.............................................................................................................1911.001.00------------1.00--------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGAA..........................................................................................................2211.001.001.00--------------------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTAA...........................................................................................................2111.001.001.00--------------------------------------------------------------
.....................................................................................................................................AGCAGTCGAAGTTTGTGCTT..........................201.000.00---------------------------------1.00-----------------------------
.....................................................AGTGGGGCACGGAGGCTGCTGA........................................................................................................221.000.00-1.00-------------------------------------------------------------
....................................................................................................................................................TGAACTGGCAGGTGGACAA............191.000.00------------------------------------1.00--------------------------
..................................................GTGAGTGGGGCACGGAGGCTGCTGCTCCCCTCG................................................................................................3311.001.00-----------------------------------------1.00---------------------
...................................................TGAGTGGGGCACGGAGGCTGAAAA........................................................................................................2411.001.00-------------1.00-------------------------------------------------
...................................................................................................AGCCGCCCTCACACCCGT..............................................................181.000.00--------1.00------------------------------------------------------
.................................................................................................................................................TTGTGAACTGGCAGGGGGA...............191.000.00-----------------1.00---------------------------------------------
...................................................TGAGTGGGGCACGGAGGCATAT..........................................................................................................221.000.00------------------------------1.00--------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTAA........................................................................................................2411.005.00-------1.00-------------------------------------------------------
..............................................................................CCTCGGCCACCGTGAGCAGGGAG..............................................................................2311.001.00----------------------1.00----------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGCA.......................................................................................................251.000.00--1.00------------------------------------------------------------
...................................................TGAGTGGGGCACGGAGAAG.............................................................................................................1911.001.001.00--------------------------------------------------------------
........................................................................................CGTGAGCAGGGAGCCGCCCTCAC....................................................................2311.001.00--------------------1.00------------------------------------------
.................................................................................................................................ACCCAGCAGTCGAAGGC.................................171.000.00----------------------------------1.00----------------------------
..............................................................................................................................................AGTTTGTGAACTGGCAGGGG.................201.000.00----------------1.00----------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGCTAT.....................................................................................................2711.001.00----------------------------------------1.00----------------------
..............................................................CGGAGGCTGCTGCTCCCCTCGGCCACC..........................................................................................2711.001.00--------------------------------------1.00------------------------
...................................................TGAGTGGGGCACGGAGA...............................................................................................................1711.001.00-1.00-------------------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGCT.......................................................................................................2511.001.00----------------------------1.00----------------------------------
.....................................................................................................CCGCCCTCACACCCCC..............................................................1620.500.50---------------0.50-----------------------------------------------
....................................................................................................................................CAGCAGTCGAAGTTTGTGAACT.........................2250.400.40-------------------0.20--------------------------0.20----------------
.....................................................................................................................................AGCAGTCGAAGTTTGTGAAC..........................2050.400.40----------------------------------------------0.20---------0.20------
..........................................................................................................................................TCGAAGTTTGTGAACTGGC......................1950.400.40-----------------------------------------------0.20------0.20--------
........................................................................................................................................................CTGGCAGGTGGACGGGGAGTAT.....2250.400.40----------------0.40----------------------------------------------
.....ATTCACCAGCTGGGCCCCG...........................................................................................................................................................1940.250.25-----------------0.25---------------------------------------------
......................CGGTCTCAGGTCCAAGA............................................................................................................................................1740.250.25---------------------------------------------0.25-----------------
..................................................................................................................................................TGTGAACTGGCAGGTGGACGGGGAG........2550.200.20----------------0.20----------------------------------------------
....................................................................................................................................CAGCAGTCGAAGTTTGTGAACTGGC......................2550.200.20---------------------------------------------------------0.20-----
.......................................................................................................................................................ACTGGCAGGTGGACGGGGA.........1950.200.20--0.20------------------------------------------------------------
.........................................................................................................................................GTCGAAGTTTGTGAACTGGCAG....................2250.200.20----------------------------------------------------------0.20----
....................................................................................................................................CAGCAGTCGAAGTTTGTGAACTGGCAGGTG.................3050.200.20-----------------------------------------------------0.20---------
...............................................................................................................................AGACCCAGCAGTCGAAGTTTGTGAA...........................2550.200.20---------------------------------------------0.20-----------------
..........................................................................................................................................TCGAAGTTTGTGAACTGGCAGGTGGAC..............2750.200.20-----------------------------------------------0.20---------------
........................................................................................................................................................CTGGCAGGTGGACGGGGAGTATCGGG.2650.200.20-----------------------------------------------------------0.20---
.....................................................................................................................................AGCAGTCGAAGTTTGTGAACTGGCAGGTGGACG.............3350.200.20------------------0.20--------------------------------------------
..................................................................................................................................CCCAGCAGTCGAAGTTTGTGAACTGGCAGG...................3050.200.20-------------------------------------------------------0.20-------
.........................................................................................................................................GTCGAAGTTTGTGAACTGGCAGGTGGACGGG...........3150.200.20--------------------------------------------0.20------------------

Antisense strand
AGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAGGTGAGTGGGGCACGGAGGCTGCTGCTCCCCTCGGCCACCGTGAGCAGGGAGCCGCCCTCACACCCCCTCCTCTCCACAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGG
..................................................(((((.((((....((((..((.((((((((((.......))))..)))))).))))))....))))....))).))....................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR038862(GSM458545)
MM472. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577579(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR038863(GSM458546)
MM603. (cell line)		SRR189782GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		TAX577741(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR343335
...............................................................................CTCGGCCACCGTGA...................................................................................... 1481.751.750.12-----0.12------------------------------------0.500.25---0.38---0.25-------0.12--
..............................................................................................................................................AGTTTGTGAACTGGCAGGTGGACGGGGAGTATCC... 341.000.00---------------------------------------1.00-----------------------
...............................................................................CTCGGCCACCGTGAG..................................................................................... 1531.001.00---------------0.33---------------------------------0.330.33------------
.......................................................................................................GCCCTCACACCCCCTCCTCTTC...................................................... 221.000.00-----------------------------------1.00---------------------------
................................................................................TCGGCCACCGTGA...................................................................................... 1390.330.33------0.11------------------------------------------------------0.110.11
...............................................................................CTCGGCCACCGTGAGTGC.................................................................................. 180.330.00---------------------------------------------------0.33-----------
.................................................................................................................CCCCTCCTCTCCACAG.................................................. 1680.120.12--------------------0.12------------------------------------------