ID: uc002oxj.4
GENE: SMG9(4)
chr19:44238598-44238847-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(22)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TACAGTTGGTAAGTCCATGGGTTGGTATCTGAGAGGATTATCTCTGAATTCTCTGAAATTGTGAGAAACATGGTGTGTATATGGTATTTTTCTGAGCATGGCTGTAGCTTTCATCAGAATCTCAAAGGAAGCCCCTGTCCCAGGCTGTGGGACCTGGGGTGCAAGTGCAAGAGCAACAGCCACTCACCCCAAACCCCAAGGTTCCTGCAGACAGCAGAGATGGTGAAGCCCTCCACCCCATCCCCCAGCC
...................................................................................................................................................((((...(((((((..((((.....((....)))))))))))))...))))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189786SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040032(GSM532917)
G603N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR343334SRR343335
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTGC..................................................................................23116.0016.003.00---2.002.00--1.001.00-----1.001.00-------1.00-------------1.00-1.00---------1.00-1.00----------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTG...................................................................................22113.0013.00-6.00--2.00---1.00---1.001.00-----------1.00---------1.00---------------------------
..................................................................................................................................................................................GCCACTCACCCCAAACCCCAAG..................................................22112.0012.00----1.00-4.001.00---------1.00----------------1.00-------1.00--1.00--1.00-----------1.00--
..................................................................................................................................................GTGGGACCTGGGGTGCAAGTGCA.................................................................................23111.0011.00-3.00---------3.00-----1.00-2.00-------1.00----------------------------1.00------
..................................................................................................................................................GTGGGACCTGGGGTGCAAGTGC..................................................................................2218.008.001.00-------1.00----1.001.00--------1.00-----1.00--1.00--------------1.00---------------
...................................................................................................................................CCCCTGTCCCAGGCTGTGGGACCTGGGGTGCAAGTGCAAGAGCAACAGCCACTCACCCCAAACCCC.....................................................6618.008.00--8.00------------------------------------------------------------
..................................................................................................................................................GTGGGACCTGGGGTGCAAGTG...................................................................................2116.006.004.00----2.00---------------------------------------------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAGA.................................................2214.001.00--------------1.001.00------2.00----------------------------------------
.................................................................................................................................................................................AGCCACTCACCCCAAACCCCAAG..................................................2314.004.00-----------------------1.00--1.00-------------------1.00----------1.00-----
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTGCA.................................................................................2413.003.003.00--------------------------------------------------------------
..................................................................................................................................................................................GCCACTCACCCCAAACCCCAAGA.................................................2312.0012.00------------2.00--------------------------------------------------
..................................................................................................................................................GTGGGACCTGGGGTGCAAGCGC..................................................................................222.000.00---------1.00---------------------------------------------1.00-------
..........................................................................................................................................................................GAGCAACAGCCACTCACCCCAAACCCCAAG..................................................3012.002.00--------------------------1.00------1.00-----------------------------
...............................................................................................................................................................................ACAGCCACTCACCCCAAACCCCAAGGTTCCGC...........................................322.000.00----------2.00----------------------------------------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCTAAG..................................................212.000.00---2.00-----------------------------------------------------------
....................................................................................................................................................................................CACTCACCCCAAACCCCAAGAT................................................222.000.00---------------------2.00-----------------------------------------
................................................................................................................................................CTGTGGGACCTGGGGTGCAAGTGCC.................................................................................251.000.00---------1.00-----------------------------------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTAA..................................................................................2311.001.00------------------1.00--------------------------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGT....................................................................................2111.001.00------------------------1.00--------------------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTGCAT................................................................................2511.003.00-------1.00-------------------------------------------------------
.................................................................................................ATGGCTGTAGCTTTCATCAGAATCTCA..............................................................................................................................2711.001.00--------------------1.00------------------------------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAG..................................................2111.001.00---------------------------1.00-----------------------------------
....................................................................................................................................................................................CACTCACCCCAAACCCCCCGA.................................................211.000.00---------------------------------------1.00-----------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAT..................................................211.000.00----------------1.00----------------------------------------------
..............CCATGGGTTGGTATCTGAGAG.......................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------1.00---
..................................................................................................................................................GTGGGACCTGGGGTGCAAGTGA..................................................................................2211.006.00-------------------------1.00-------------------------------------
.......................................................AAATTGTGAGAAACATGGTGTGTATA.........................................................................................................................................................................2611.001.00-----------------------------------------------------1.00---------
....................GTTGGTATCTGAGAGTAGA...................................................................................................................................................................................................................191.000.00-----------------------------------------1.00---------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAG.....................................................................................2011.001.00---1.00-----------------------------------------------------------
................................................................................................................................................................................CAGCCACTCACCCCAAACCCCAAG..................................................2411.001.00-------1.00-------------------------------------------------------
.......................................................................................................................................................ACCTGGGGTGCAAGTGCAAGAGCA...........................................................................2411.001.00------------------1.00--------------------------------------------
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAGC.................................................2211.001.00---------------------------------------------------1.00-----------
.......GGTAAGTCCATGGGTTGGTATCT............................................................................................................................................................................................................................2311.001.00-------------------------------------------------1.00-------------
..............................................................................................AGCATGGCTGTAGCTTTCATCAG.....................................................................................................................................2311.001.00-------------------------------1.00-------------------------------
...................................................................................GTATTTTTCTGAGCATGGCTGTAGCTTTCATCAGAATCTCAAAGGAAGCCCCTGTCCCAGGCTGTGGGACCTGGGGTGCAAGTG...................................................................................8411.001.00--------------------------------------------1.00------------------
..................................................................................................TGGCTGTAGCTTTCATCAGAATCTCAAAG...........................................................................................................................2911.001.00-------------------------------------1.00-------------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTAG..................................................................................2311.001.00----------------------------------------------------------1.00----
...................................................................................................................................................................................CCACTCACCCCAAACCCCAAGT.................................................2211.001.00------------------------------------------------------1.00--------
.....................................................................................................................................................................................ACTCACCCCAAACCCCAAGTT................................................211.000.00-------------------------------------------1.00-------------------
.................................................................................................................................................TGTGGGACCTGGGGTGCAAGTGT..................................................................................2311.0013.00------------------------------1.00--------------------------------
......................................................................................................................................................................................CTCACCCCAAACCCCAAGATT...............................................211.000.00----------------------------1.00----------------------------------
...AGTTGGTAAGTCCATGGGC....................................................................................................................................................................................................................................191.000.00----------1.00----------------------------------------------------
.................................................................................TGGTATTTTTCTGAGCATGGC....................................................................................................................................................2111.001.00--------------------1.00------------------------------------------

Antisense strand
TACAGTTGGTAAGTCCATGGGTTGGTATCTGAGAGGATTATCTCTGAATTCTCTGAAATTGTGAGAAACATGGTGTGTATATGGTATTTTTCTGAGCATGGCTGTAGCTTTCATCAGAATCTCAAAGGAAGCCCCTGTCCCAGGCTGTGGGACCTGGGGTGCAAGTGCAAGAGCAACAGCCACTCACCCCAAACCCCAAGGTTCCTGCAGACAGCAGAGATGGTGAAGCCCTCCACCCCATCCCCCAGCC
...................................................................................................................................................((((...(((((((..((((.....((....)))))))))))))...))))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189786SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040032(GSM532917)
G603N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR343334SRR343335
.............................................................................................................................................................GGTGCAAGTGCAAGATGCG.......................................................................... 191.000.00---1.00-----------------------------------------------------------
.............................................................................................................................................................GGTGCAAGTGCAAGATTCC.......................................................................... 191.000.00---1.00-----------------------------------------------------------
......................................................................................................................................................................GCAAGAGCAACAGCCAGG.................................................................. 181.000.00----------------------------1.00----------------------------------
..................................................................................................................................................................AAGTGCAAGAGCAACATT...................................................................... 181.000.00---1.00-----------------------------------------------------------
.....................................................................................................CTGTAGCTTTCATCAGAGTA................................................................................................................................. 201.000.00------------------------------------1.00--------------------------
................................................................................................CATGGCTGTAGCTTT........................................................................................................................................... 1550.400.40-------------------------------------------------------------0.200.20