ID: uc002oxj.3
GENE: SMG9(3)
chr19:44237836-44238085-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(5)
B-CELL 		(4)
BRAIN 		(8)
BREAST 		(29)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
GGCAGAAATCAGACCTGACTCACTTCTGGGTCCCCAGCATTGCCCTACACAGAGCCTGGTGCTAAAGTGAAGTGAAGTTATATAAATATTTACACAGTGATCTGAACTCAGGGGTAACAACAGGTCTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAGTCTTCTTGCAGAACAAAGCTCGCCGAGAGGACTTCTGTCCTCGGAAGCTG
................................................................................................................................(((((((.((((((((.((((.....((...))..((((.....)))))))))).))).))).))))).))...................................................
.........................................................................................................................122...........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR038863(GSM458546)
MM603. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189786SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189787SRR029125(GSM416754)
U2OS. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR189785SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGT.......................................................................................................21134.0034.0021.005.00-----1.00-1.00--1.001.001.00----1.00----1.00----------------1.00---------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCT.....................................................................................................22121.0012.0018.00-------------------------1.00---1.00----1.00---------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCT.....................................................................................................23114.009.009.00--1.001.001.001.00---------------1.00----------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTC......................................................................................................21112.0012.00-7.00--2.002.00---------1.00-----------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTC......................................................................................................2219.009.001.00----1.00---1.00-------2.001.00-1.00------------------1.00--------1.00--------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCA.....................................................................................................2318.009.005.00--1.00-----1.00------------------------1.00----------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAG........................................................................................................2028.008.003.00-----0.501.00-----------------------------------------------0.500.50-0.500.50----0.50-0.500.50-
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCA.....................................................................................................2218.0012.003.00--2.00----------1.00---1.00--1.00-----------------------------------------------
.............................................................................................................................CTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAG..................................................7517.007.00--7.00------------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAG........................................................................................................1926.006.004.00----------0.50--------------------1.00---------------------------0.50--------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAA....................................................................................................2316.0012.006.00--------------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGT.......................................................................................................2015.005.003.00------------1.00-----------------------1.00-------------------------------
................................................................................................................................TGGGGTGAGAAAGGGGAGTCCAT...................................................................................................2315.005.005.00--------------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAT....................................................................................................2415.009.00---2.00---------------------------1.00---------------1.00-----1.00---------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAT....................................................................................................2313.0012.00----------------2.00---------------------------------1.00------------------
.......................................................................................................................ACAGGTCTTTGGGGTGAGAAAGGG...........................................................................................................2412.002.00----------2.00----------------------------------------------------------
..............................................................................................................................................................................CAGGGCCCGTCTCTTCCCACCC......................................................2212.002.002.00--------------------------------------------------------------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAGT.................................................2212.002.00-----------------------1.00-1.00-------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCTTT...................................................................................................2412.0012.00------1.00---------------------------------------------1.00----------------
................................................................................................................................TGGGGTGAGAAAGGGGAGTCCATGT.................................................................................................252.000.002.00--------------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGA.........................................................................................................1921.501.50--------------------0.50-----------------------------------------0.50--0.50---
...............................................................................................................................TTGGGGTGAGAAAGGGGA.........................................................................................................1821.001.00----------1.00----------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCTCT...................................................................................................2511.009.00-----------1.00---------------------------------------------------------
..............................................................................TATATAAATATTTACGTAA.........................................................................................................................................................191.000.00------1.00--------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTAA.....................................................................................................2311.0034.00-------1.00-------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTAG.....................................................................................................2211.005.00-----------------------------1.00---------------------------------------
.....................................................................................................CTGAACTCAGGGGTAACAACA................................................................................................................................2111.001.00----------------------------------------1.00----------------------------
................................................................................................................................TGGGGTGAGAAAGGGGAGT.......................................................................................................1911.001.00------------------------------------------------------1.00--------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAAG...................................................................................................2411.0012.00------------------------------------------1.00--------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAA....................................................................................................2411.009.00--------------------------------------------1.00------------------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAG..................................................2111.001.00---------------------------------------------1.00-----------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAAA.......................................................................................................2021.001.001.00--------------------------------------------------------------------
.........CAGACCTGACTCACTGGC...............................................................................................................................................................................................................................181.000.00----------------------------------------------1.00----------------------
..................................................................................................GATCTGAACTCAGGGTACG.....................................................................................................................................191.000.00--------------------------------------1.00------------------------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAGC.................................................2211.001.00-----------1.00---------------------------------------------------------
......................................................................................................................................................................CTGCCTGACAGGGCCCGTCTCTTCCC..........................................................2611.001.00----------------------------1.00----------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAAC...................................................................................................2511.009.00----1.00----------------------------------------------------------------
........TCAGACCTGACTCACTATA...............................................................................................................................................................................................................................191.000.00------------------------------------1.00--------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAACC..................................................................................................2611.009.00--------1.00------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCCTC...................................................................................................241.000.00--------1.00------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAAAA..................................................................................................2511.0012.00------------1.00--------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCATA...................................................................................................2511.009.00----1.00----------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCTT....................................................................................................2311.0012.00-------------------------------------------------1.00-------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCTAA...................................................................................................2511.009.00---------------------------1.00-----------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCCATA..................................................................................................251.000.00---------------1.00-----------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGAAT........................................................................................................2020.500.50---------------------------------------------------------------0.50-----
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGCC......................................................................................................2220.508.00-------------------0.50-------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGACT.....................................................................................................2220.506.000.50--------------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGG...........................................................................................................1720.500.50-------------------------------------------------------------0.50-------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGACC.....................................................................................................2320.508.00--------0.50------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGC.......................................................................................................2120.508.00--------0.50------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGG..........................................................................................................1740.250.25--------------------------------------------------------------------0.25
...............................................................................................................................TTGGGGTGAGAAAGGG...........................................................................................................1660.170.17------------0.17--------------------------------------------------------

Antisense strand
GGCAGAAATCAGACCTGACTCACTTCTGGGTCCCCAGCATTGCCCTACACAGAGCCTGGTGCTAAAGTGAAGTGAAGTTATATAAATATTTACACAGTGATCTGAACTCAGGGGTAACAACAGGTCTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAGTCTTCTTGCAGAACAAAGCTCGCCGAGAGGACTTCTGTCCTCGGAAGCTG
................................................................................................................................(((((((.((((((((.((((.....((...))..((((.....)))))))))).))).))).))))).))...................................................
.........................................................................................................................122...........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR038863(GSM458546)
MM603. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189786SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189787SRR029125(GSM416754)
U2OS. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR189785SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)
...........................GGGTCCCCAGCATTGCCGTGG.......................................................................................................................................................................................................... 211.000.00---------------------------------------------------1.00-----------------
.................................................................................................................................................................................GGCCCGTCTCTTCCCAC........................................................ 1711.001.00---------------------------------1.00-----------------------------------
................................................................................................GTGATCTGAACTCAGGCCA....................................................................................................................................... 191.000.00-------------------------------------------1.00-------------------------
...........................GGGTCCCCAGCATTGCCCTACACAG...................................................................................................................................................................................................... 2520.500.50---------------------------------------------------------0.50-----------