ID: uc002oam.6
GENE: HAUS5(6)
chr19:36108046-36108238+


(2)
AGO1.ip 		(4)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(33)
CELL-LINE 		(1)
CERVIX 		(3)
FIBROBLAST 		(2)
HEART 		(3)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCTTTGGATCCCTCACGTCGGCAGCTCTGGGCCTGGAGCCCGTGGTCCTGGTAAGAGTCCTGGTCATGGGAGAAGGGGCAGGGAGCCTGGAGTCAGGCAGATGCTAGGGTCCCCCTCAGGTCCCTTCCTCCTCTTCTCCCTAGCGTGATGTCCGAACAGCCTGCACCCTCCGGGCCCAGTTCCTGCAGAACCT
...................................................................(((((((((((.((((.(((((....))))).......((((.((......)).))))))))))))))))))).....................................................
............................................................61................................................................................143................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189782SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189785SRR189787SRR037935(GSM510473)
293cand3. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGT.................................................21135.0013.00-2.002.001.004.001.00-2.002.003.00--1.00-2.00--2.00-2.002.00----1.001.00----1.00-1.00-----1.00-------1.00----1.00-1.00-1.00----------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAG..................................................20113.0013.00-2.001.002.00-3.00-----1.00--------------------1.00-1.00-------1.00------------1.00-----------------------
.................................................................ATGGGAGAAGGGGCAGGGAGC...........................................................................................................2126.006.00---1.00------2.50--------------------------0.500.50-----------0.50-------------0.50--------0.50-----
.................................................................ATGGGAGAAGGGGCAGGGAGCC..........................................................................................................2215.005.00---1.00--1.00---------1.00------------1.00---------------------------1.00---------------------
...........................................................................................................................CTTCCTCCTCTTCTCCTTAG..................................................203.000.00-3.00-----------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCT.........................................................................................................2313.003.00------------------------------------------------1.00----1.00------1.00------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTCT.......................................................................................................2512.003.002.00------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTTT.......................................................................................................2512.003.00-1.00----------------------1.00------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTACT......................................................................................................2612.003.002.00------------------------------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGTAA...............................................2312.0013.00------------------1.00-----------1.00------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCCTT.......................................................................................................262.000.002.00------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGA...........................................................................................................2122.001.50-----------------------------------0.50--------------------------------0.50-0.50-----0.50--
.................................................................ATGGGAGAAGGGGCAGGGAGCCCT........................................................................................................2412.005.002.00------------------------------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGA.................................................2112.0013.00---------------------1.00-----------------------1.00---------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAG............................................................................................................2021.501.50--------------------------------------0.50----------------------------0.50-0.50---------
.................................................................ATGGGAGAAGGGGCAGGG..............................................................................................................1821.501.50-0.50--------------------0.50--------------0.50-----------------------------------------
...............................................................TCATGGGAGAAGGGGCAGGGAGCAGA........................................................................................................261.000.00-------------1.00-----------------------------------------------------------------
...........................TGGGCCTGGAGCCCGTGGTCCTGCGTG...........................................................................................................................................271.000.00----------------1.00--------------------------------------------------------------
........................................................................................................................TCCCTTCCTCCTCTTCTCCCTAG..................................................2311.001.00-1.00-----------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAAA...........................................................................................................2121.001.00------------------0.50-------------------------------------------------------0.50----
................................................................CATGGGAGAAGGGGCAGGGAGCCAAA.......................................................................................................261.000.00--1.00----------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCTT........................................................................................................251.000.00-----------------------------------------------------------1.00-------------------
........................................................................................................................TCCCTTCCTCCTCTTCTCCCTAGC.................................................2411.001.001.00------------------------------------------------------------------------------
..........................................................................................................................................................................CGGGCCCAGTTCCTGC.......1611.001.00---------------------------1.00---------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCATT.......................................................................................................261.000.00-------------------------------------------------------------1.00-----------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTTGT......................................................................................................2611.003.00-1.00-----------------------------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGCT................................................221.000.00------1.00------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCC.........................................................................................................2311.005.001.00------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTA........................................................................................................2411.003.00--------1.00----------------------------------------------------------------------
........................................................................................................................TCCCTTCCTCCTCTTCTCCCTAGAC................................................2511.001.001.00------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCAT........................................................................................................2411.005.00--1.00----------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCAAAT......................................................................................................2611.005.00-----------------------1.00-------------------------------------------------------
..................................................GTAAGAGTCCTGGTCATG.............................................................................................................................1811.001.00----------------------------------------------1.00--------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCAAT.......................................................................................................2511.005.00------------------------------------1.00------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCCTAAA......................................................................................................271.000.00------1.00------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCA.........................................................................................................2311.005.00-------------1.00-----------------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTATA.................................................211.000.00-------1.00-----------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAAT...........................................................................................................221.000.00----------------------1.00--------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGA.............................................................................................................1921.001.00--------------------------------------------------0.50-----------0.50----------------
................................................................CATGGGAGAAGGGGCAGGGAGCCAT........................................................................................................251.000.00------1.00------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAAAA..........................................................................................................231.000.00--------------------------------------------1.00----------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCAT.........................................................................................................2321.006.00------------------0.50-----------------------------------------------0.50------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGTT................................................2211.0013.00---------------------------------------------------1.00---------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGTA................................................2211.0013.00---------------------1.00---------------------------------------------------------
..................................................................................................................................................GATGTCCGAACAGCCTGCA............................1911.001.00----------------------------------------------------------1.00--------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTAC.......................................................................................................2511.003.001.00------------------------------------------------------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTATTT................................................221.000.00-------------------------------------------1.00-----------------------------------
...........................................................................................................................CTTCCTCCTCTTCTCCCTAGG.................................................2111.0013.00--1.00----------------------------------------------------------------------------
..........................................................................................................................CCTTCCTCCTCTTCTCCCTAGTCA...............................................241.000.00----------------------------1.00--------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCCTT........................................................................................................2411.003.001.00------------------------------------------------------------------------------
...........................................................................................................................................................ACAGCCTGCACCCTCCGGGCCCAGTTCCTGCAG.....3311.001.00-------------------------------------------------1.00-----------------------------
.......ATCCCTCACGTCGGCAGCGC......................................................................................................................................................................201.000.00---------------1.00---------------------------------------------------------------
..........................................................................................................................................................AACAGCCTGCACCCTCCG.....................1811.001.00-----------1.00-------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAAT...........................................................................................................2120.501.00-----------------------------------------------------------------------0.50-------
.................................................................ATGGGAGAAGGGGCAGGGAGCAAAT.......................................................................................................2520.506.00-----------------------------------------------------------------0.50-------------
.................................................................ATGGGAGAAGGGGCAGGGAAAC..........................................................................................................2220.501.000.50------------------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAACCA.........................................................................................................2320.501.00-----------------------0.50-------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGCTCAT.......................................................................................................2620.500.500.50------------------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAGA...........................................................................................................2220.500.50------------0.50------------------------------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGCAA.........................................................................................................2320.506.00-----------------------------------0.50-------------------------------------------
.................................................................ATGGGAGAAGGGGCAGGGAGAAAA........................................................................................................2420.501.50------------------------------------------------------------------------0.50------
................................................................CATGGGAGAAGGGGCAGGG..............................................................................................................1920.500.50---------------------------------------------------------------------------0.50---
.................................................................ATGGGAGAAGGGGCAGGGAGCAAAA.......................................................................................................2520.506.00-----------------------------------------------------------------------------0.50-
................................................................CATGGGAGAAGGGGCAGGGAGC...........................................................................................................2220.500.50------------0.50------------------------------------------------------------------
................................................................CATGGGAGAAGGGGCAGGGAG............................................................................................................2120.500.50---------------------------------------------------------------0.50---------------

Antisense strand
CCTTTGGATCCCTCACGTCGGCAGCTCTGGGCCTGGAGCCCGTGGTCCTGGTAAGAGTCCTGGTCATGGGAGAAGGGGCAGGGAGCCTGGAGTCAGGCAGATGCTAGGGTCCCCCTCAGGTCCCTTCCTCCTCTTCTCCCTAGCGTGATGTCCGAACAGCCTGCACCCTCCGGGCCCAGTTCCTGCAGAACCT
...................................................................(((((((((((.((((.(((((....))))).......((((.((......)).))))))))))))))))))).....................................................
............................................................61................................................................................143................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189782SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189785SRR189787SRR037935(GSM510473)
293cand3. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................GGTCCCTTCCTCCTCTTCAA....................................................... 201.000.00-----------------------------------------1.00-------------------------------------
................................................................................................................................................................CTGCACCCTCCGGGCCCAACGT........... 221.000.00----------------------------------------1.00--------------------------------------
.................................................................................GGAGCCTGGAGTCAGGACCT............................................................................................ 201.000.00---------------1.00---------------------------------------------------------------
.......................................................................................................................GTCCCTTCCTCCTCTTC......................................................... 1740.250.25------------------------------------------------------------------------------0.25