ID: uc002hcs.4
GENE: TRAF4(4)
chr17:27075392-27075578+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(11)
B-CELL 		(3)
BRAIN 		(17)
BREAST 		(31)
CELL-LINE 		(1)
FIBROBLAST 		(7)
HELA 		(7)
LIVER 		(2)
OTHER 		(1)
OTHER.ip 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTCAGCCCTGCACCTACTGCACTAAGGAGTTCGTCTTTGACACCATCCAGGTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAACCAATG
...................................................................(((.((((..(((((((((.((((((.((((((....))))))))))..)))))))).)))..)))))))..................................................
.................................................................66.....................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029127(GSM416756)
A549. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR038857(GSM458540)
D20. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR343334SRR189786SRR038859(GSM458542)
MM386. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189784SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR189785SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................TGGGTTGCAGGGTAGGTGACA................................................................................................21125.0025.00----1.002.00--1.004.00---2.00---------2.00-2.001.001.00------1.00--1.00---1.00----1.00---1.00----------------1.00-----1.00---------1.00-----1.00-------
..........................................................................TTGCAGGGTAGGTGACAGGTAG...........................................................................................22114.0014.0012.00-----------------1.00-----------1.00------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTG.........................................................80110.0010.00-6.00-4.00---------------------------------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAG...........................................................................................2118.008.002.00---1.00-1.00---------------------2.00---------------------------------------1.00----------------1.00-----------
......................................................................TGGGTTGCAGGGTAGGTGA..................................................................................................1918.008.00-----1.00-1.00-----1.00----------1.00-1.001.00-----------------------------1.00-------------------1.00-------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAT..................................................2316.003.00--4.00---------------------------------------1.00--------------------------------------------1.00---------
..................................................................................................................CCTCTCTACTTCTGTGGCC......................................................1915.005.00------1.00----------1.00------------------------------------1.00--------------1.00--------1.00------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGG........................................................2315.005.00----------------3.00-----------------------------------------1.00-------------1.00------------------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGA..........................................................................................2315.0014.004.00------1.00-----------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAA..................................................2314.003.00-----------4.00-------------------------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCC.....................................................8413.003.00-3.00-----------------------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTG...................................................................................................2013.003.00-------1.00------------------------2.00----------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTA............................................................................................2013.003.001.00--------------1.00----1.00----------------------------------------------------------------------------
.......................AAGGAGTTCGTCTTTGACAC................................................................................................................................................2013.003.00----------3.00--------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCA...................................................2213.003.00-----------------1.00-2.00-----------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCATT.................................................2413.003.00--1.00-----------------------------------------------------------1.00-------1.00--------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGT.................................................2413.001.00------1.00----------1.00------------------------------1.00------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGAC.................................................................................................2013.003.00------------------2.00-----------------------------------------1.00------------------------------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGT..........................................................................................2313.003.002.00-----------------------1.00------------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTT...............................................................................................................2612.002.001.00--------------------------------------------------------------------------1.00---------------------
....................................................................TGTGGGTTGCAGGGTAGGTGACA................................................................................................2312.002.00--------1.00---1.00------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAA...............................................................................................2212.0025.00----1.00-------1.00------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGAAA................................................................................................2112.008.00----2.00--------------------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGA..................................................................................................2112.002.00-----1.00--------------------------------------1.00----------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGAC.................................................................................................2212.002.00--2.00----------------------------------------------------------------------------------------------
...............................................................................................................CTGCCTCTCTACTTCTGTGGC.......................................................2112.002.002.00------------------------------------------------------------------------------------------------
...............................................................TGAACTGTGGGTTGCAGGGTAGG.....................................................................................................2312.002.00---------------------1.00------------------------------------------------------------------1.00--------
........................AGGAGTTCGTCTTTGACACCA..............................................................................................................................................2112.002.00----------1.00----1.00---------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTAG...........................................................................................2612.002.001.00------------------------------------------------------1.00-----------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCC......................................................8312.002.00---2.00---------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGT..............................................................................................231.000.00------------------------------------1.00------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAAA.....................................................................................................181.000.00--------1.00----------------------------------------------------------------------------------------
.......................AAGGAGTTCGTCTTTGACACCAT.............................................................................................................................................2311.001.00-----------------------------------------------------1.00-------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCCA..................................................2311.001.00------------1.00------------------------------------------------------------------------------------
........................AGGAGTTCGTCTTTGACACCAT.............................................................................................................................................2211.001.00-----------------------------------------------------------------1.00-------------------------------
......................................................................TGGGTTGCAGGGTAGGTGATT................................................................................................2111.008.00-----1.00-------------------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGACAGG..............................................................................................2511.001.00---------------------------------------------------------------------------------1.00---------------
..............................................................................................................CCTGCCTCTCTACTTCTGTGG........................................................2111.001.00---------------------------------1.00---------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGG.................................................................................................................2411.001.00---------------------1.00---------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTG...................................................................................................1811.001.00----------------------1.00--------------------------------------------------------------------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGTA.........................................................................................2411.003.00--------1.00----------------------------------------------------------------------------------------
...................................................................CTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAG.......................................................................................3311.001.00----------------------------------------------------------------------------------1.00--------------
...........................................................................TGCAGGGTAGGTGACAGGTAGA..........................................................................................2211.008.001.00------------------------------------------------------------------------------------------------
................................................................................................................................................AGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCC..........3311.001.00--------------------------------------------------------1.00----------------------------------------
...................................................................................AGGTGACAGGTAGTCAGGATAT..................................................................................2211.001.00-----------------------------------------------------------------------1.00-------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTTT........................................................231.000.00------------1.00------------------------------------------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTG.........................................................2211.001.00-------------------------------------------------------------------------------1.00-----------------
....................................................................................................................TCTCTACTTCTGTGGCCCCAG..................................................2111.001.001.00------------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTAGTC.........................................................................................2811.001.00------------------------------------------------------------------1.00------------------------------
.............................................................................................................TCCTGCCTCTCTACTTCTGTGGC.......................................................2311.001.00----------------------------------------1.00--------------------------------------------------------
.......................AAGGAGTTCGTCTTTGACACCATCCA..........................................................................................................................................2611.001.00--------------------------------------------------------------------------------------1.00----------
....................................................................TGTGGGTTGCAGGGTAGGTGAAT................................................................................................2311.002.00---------------------------------------------------------------1.00---------------------------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGTCA........................................................................................2511.001.00------------------------------------------------------------------------------------1.00------------
...............ACTGCACTAAGGAGTTCGTCTTTGACACC...............................................................................................................................................2911.001.00-------------------------------1.00-----------------------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGGA.......................................................2411.005.00-------------------------------------------1.00-----------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCTTT...................................................2211.005.00------1.00------------------------------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGCAGT..........................................................................................221.000.001.00------------------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGA.................................................2411.001.00--------------------------------------1.00----------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCC.....................................................2011.001.00---------------------------------1.00---------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGG.....................................................................................................1811.001.00--------------------------------------------------------------------------------1.00----------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCC....................................................2111.001.00--------------------1.00----------------------------------------------------------------------------
.....................................................................................................ATATTGACTCCTGCCTCTCTACTTCTG...........................................................2711.001.00--------------1.00----------------------------------------------------------------------------------
................................GTCTTTGACACCATCCAG.........................................................................................................................................1821.001.00--------------------------------------------------------------------------------------------0.500.50---
................................................................................................................................................AGTACCAGTGCCCAAGGCTGCCTG...................2411.001.00-----------------------------1.00-------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAG..................................................2311.001.00--------------------------------------------------------------------------1.00----------------------
......................TAAGGAGTTCGTCTTTGACACC...............................................................................................................................................2211.001.00----------------------------------------------------------------1.00--------------------------------
.....................................................................GTGGGTTGCAGGGTAGGTGACAG...............................................................................................2311.001.00----------------------1.00--------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAT...............................................................................................2211.0025.00---------------------------------------------------1.00---------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGC.................................................2411.001.00---------------------------------------1.00---------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGATA............................................................................................201.000.00---------------1.00---------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAAA.................................................2411.003.00------------------------------------------------------------------------------------------1.00------
................................................................................................................................................AGTACCAGTGCCCAAGG..........................1711.001.00-----------------------------------------------1.00-------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAGT..........................................................................................2211.001.00------------------------------1.00------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAGTC.........................................................................................2311.001.00--1.00----------------------------------------------------------------------------------------------
............................................................................GCAGGGTAGGTGACAGGTAGT..........................................................................................2111.001.00----------------------------------1.00--------------------------------------------------------------
.....................................................................................................ATATTGACTCCTGCCTCTCTACTTCT............................................................2611.001.00--------------1.00----------------------------------------------------------------------------------
.....................CTAAGGAGTTCGTCTTTGACACCATCC...........................................................................................................................................2711.001.00-------------------------------1.00-----------------------------------------------------------------
.................................................................................GTAGGTGACAGGTAGTC.........................................................................................1711.001.00----------------------------------------------------1.00--------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAAT.................................................2411.003.00---------------------------------------------1.00---------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGGC.......................................................2411.001.00-------------------------------------------------1.00-----------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTA............................................................................................2511.001.00-------1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................CTGTTGCCTGCCCCAACC....1820.500.50-------------------------------------------------------------------------------------------0.50-----
..................................................................................................................CCTCTCTACTTCTGTGG........................................................1730.330.33------0.33------------------------------------------------------------------------------------------
....................................................................................................GATATTGACTCCTGCC.......................................................................1630.330.33----------------------------------------------------------------------------------------------0.33--

Antisense strand
CTCAGCCCTGCACCTACTGCACTAAGGAGTTCGTCTTTGACACCATCCAGGTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAACCAATG
...................................................................(((.((((..(((((((((.((((((.((((((....))))))))))..)))))))).)))..)))))))..................................................
.................................................................66.....................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029127(GSM416756)
A549. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR038857(GSM458540)
D20. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR343334SRR189786SRR038859(GSM458542)
MM386. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189784SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR189785SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................................GTGCCCAAGGCTGCCTGTTGCCTGCCCCAACGG... 331.000.00-----------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................................GGCTGCCTGTTGCCTG............ 161.000.00-----------------------------------------------------------1.00-------------------------------------
................................................................................................................................................AGTACCAGTGCCCAATGGG........................ 191.000.00-------------------------------------------------------------1.00-----------------------------------
................CTGCACTAAGGAGTTCGGA........................................................................................................................................................ 191.000.00--------------1.00----------------------------------------------------------------------------------
..........................................................................................AGGTAGTCAGGATATCTG............................................................................... 181.000.00----------------------------------------------------------------------------1.00--------------------
...................................................................................................................................CCCCAGAGCCACCAGTACCAG................................... 2111.001.00-----------------------------------1.00-------------------------------------------------------------
.....................................................................................................................................CCAGAGCCACCAGTACCAG................................... 1920.500.50-----------------------------------0.50-------------------------------------------------------------
......................................................................................................................TCTACTTCTGTGGCCCC.................................................... 1730.330.33-----------------------------------------------------------------------------------------------0.33-
.............CTACTGCACTAAGGA............................................................................................................................................................... 1570.140.14------------------------------------------------------------------------------------------------0.14