ID: uc002gjp.18
GENE: CNTROB(18)
chr17:7852426-7852752+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(6)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(20)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
LIVER 		(7)
OTHER 		(22)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TCCCCAGAAGGAACACAGACTCCCGCTTGGGTGAGATCCCCCGGAAAGAGGTGAGGGAAAGTCAGGCAGGGACCAGGGGAGAAAAGGGCTCTCACTGACCAGCTCCTTCACCTCTGCACACTCCTGGCTGGCCCCTCCATTCCACCCCTGCATTCTGTAGCATGGCCTTTCCTCCCTGCAGACTCATCTGGCCCTCTCCACGTGCATTTCCTCAGTGGGGTGGGGAATTGAGAGGATCTGACGCTGATTTCTTCCTCTCTCTTCCCTCAACTCTCAGATTCCCTCCCAGGCTGTCCCTCGCCGCCTTGCTACAGCCCCCAAGACTGA
.......................................................................................................................................................................................................................((((((((((((..(((((((...((........)).)))))))..))))))..)))).))...................................................
.....................................................................................................................................................................................................................214............................................................277................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343334SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR343336SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................................................GTGGGGTGGGGAATTGAGAGGA...........................................................................................22115.0015.002.00---------1.00-2.002.001.00-2.002.001.00--------------------------------------1.00--1.00-----
.......................................................................................................................................................................................................................TGGGGTGGGGAATTGAGAGGAAT.........................................................................................2318.006.007.001.00----------------------------------------------------------------
.......................................................................................................................................................................................................................TGGGGTGGGGAATTGAGAGGATC.........................................................................................2317.007.00----5.00-2.00-----------------------------------------------------------
.......................................................................................................................................................................................................................TGGGGTGGGGAATTGAGAGGA...........................................................................................2116.006.004.00--------1.00----------------------------------------1.00---------------
......................................................................................................................................................................................................................GTGGGGTGGGGAATTGAGAGG............................................................................................2115.005.00--4.00------------------1.00--------------------------------------------
............................................................................................................................................................................................................................TGGGGAATTGAGAGGATCTGA......................................................................................2115.005.00-3.00-----------------------------------------1.00-----------1.00----------
................................................................................................................................................................................................................................GAATTGAGAGGATCTGTCA....................................................................................195.000.00---5.00--------------------------------------------------------------
................................................................................................................................................................................................................................GAATTGAGAGGATCTGCCCT...................................................................................205.000.00-----4.00------------------------------------------------1.00-----------
.....................................................................................................................................................................................................................AGTGGGGTGGGGAATTGAGAGGAAT.........................................................................................2514.003.004.00-----------------------------------------------------------------
................................................................................................................................................................................................................................GAATTGAGAGGATCTGC......................................................................................174.000.00--------3.00-------------------------------------1.00-------------------
..............................................................................................................................................................................................................................................................CTCTCTCTTCCCTCAACTCTCAGT.................................................2413.002.002.00-----------------------1.00-----------------------------------------
...........................................................................................................................................................................................................................GTGGGGAATTGAGAGGATCTGA......................................................................................2213.003.00-2.00---------------------------------------------------------1.00------
...............................................................................................................................................................................................................................................................TCTCTCTTCCCTCAACTCTCAGT.................................................2313.001.00-------3.00----------------------------------------------------------
.....................................................................................................................................................................................................................AGTGGGGTGGGGAATTGAGAGGA...........................................................................................2313.003.00------------------1.00--------------------------1.00----------1.00---------
.....................................................................................................................................................................................................................AGTGGGGTGGGGAATTGAGAGG............................................................................................2213.003.001.002.00----------------------------------------------------------------
......................................................................................................................................................................................................................GTGGGGTGGGGAATTGAGAGGAA..........................................................................................2313.0015.00----------1.00-----------------1.00-----1.00-------------------------------
.....................................................................................................................................................................................................................AGTGGGGTGGGGAATTGAGAGGTTTT........................................................................................2613.003.00-3.00----------------------------------------------------------------
...........................................................................................................................................................................................................................GTGGGGAATTGAGAGGATCTG.......................................................................................2112.002.00-2.00----------------------------------------------------------------
......................................................................................................................................................................................................................GTGGGGTGGGGAATTGAGAGGAT..........................................................................................2312.002.00------1.00------------------------1.00----------------------------------
..............................................................................................................................................................................................................................................................CTCTCTCTTCCCTCAACTCTCAG..................................................2312.002.001.00----------------------------------------1.00------------------------
.......................................................................................................................................................................................................................TGGGGTGGGGAATTGAGAGGAAA.........................................................................................2312.006.00-----------1.00------------------------1.00-----------------------------
............................................................................................................................................................................................................................TGGGGAATTGAGAGGATCTGAA.....................................................................................2212.005.00-2.00----------------------------------------------------------------
.......................................................................................................................................................................................................................TGGGGTGGGGAATTGAGAGG............................................................................................2012.002.002.00-----------------------------------------------------------------
.....................................................................................................................................................................................................................AGTGGGGTGGGGAATTGAGAGGAT..........................................................................................2411.001.00-----------------------------1.00------------------------------------
............................................................................................................................................................................................................................................TCTGACGCTGATTTCTTCT........................................................................191.000.00----------------------1.00-------------------------------------------
.....................................................................................................................................................................................................................AGTGGGGTGGGGAATTGAGAGTA...........................................................................................231.000.001.00-----------------------------------------------------------------
.................................................................................................................................................................................................................................AATTGAGAGGATCTGACC....................................................................................181.000.00------------------------------------------------1.00-----------------
...........................................................................................................................................................................................................................GTGGGGAATTGAGAGGATCTGAC.....................................................................................2311.001.00--1.00---------------------------------------------------------------
..............................................................................................................................................................................................................................................................CTCTCTCTTCCCTCAACTCTC....................................................2111.001.00------------------------------1.00-----------------------------------
.................................................................................................................................................................................................................................AATTGAGAGGATCTGTCCC...................................................................................191.000.00---------------------------------------------------1.00--------------
...........................................................................................................................................................................................................................GTGGGGAATTGAGAGGATCTGAG.....................................................................................2311.003.00-1.00----------------------------------------------------------------
......................................................................................................................................................................................................................GTGGGGTGGGGAATTGAGAGGATT.........................................................................................2411.002.00-------------------------------------1.00----------------------------
................................................................................................................................................................................................................................GAATTGAGAGGATCTGA......................................................................................1711.001.00----------------------------------------------------------1.00-------
.......AAGGAACACAGACTCCCGCTTGGGCGAG....................................................................................................................................................................................................................................................................................................281.000.00---------------------------------1.00--------------------------------
..................................................................................................................................................................................................................CTCAGTGGGGTGGGGTAGC..................................................................................................191.000.00-----------------------------------------------------1.00------------
........................................................................................................................CTCCTGGCTGGCCCCCCA.............................................................................................................................................................................................181.000.00---------------1.00--------------------------------------------------
.....................................................................................................................................................................................................................AGTGGGGTGGGGAATTGAGAGGC...........................................................................................2311.003.00-----------1.00------------------------------------------------------
................................................................................................................................................................................................................................GAATTGAGAGGATCTGACTC...................................................................................201.000.00-------------------------------------------------1.00----------------
...............................................................................................................................................................................................................................................................TCTCTCTTCCCTCAACTCTCAG..................................................2211.001.00-----------------------1.00------------------------------------------
.......................................................................................................................................................................................................................TGGGGTGGGGAATTGAGAGGAT..........................................................................................2211.001.00--------------------1.00---------------------------------------------
........................................................................................................................CTCCTGGCTGGCCCCCCC.............................................................................................................................................................................................181.000.00-----------------------------------------------1.00------------------
...................................ATCCCCCGGAAAGAG.....................................................................................................................................................................................................................................................................................1511.001.00-------------------------1.00----------------------------------------
.......................................................................................................................................................ATTCTGTAGCATGGCCTTT.............................................................................................................................................................1911.001.00------------------------------------------1.00-----------------------
....................................................................................................................................................................................................................CAGTGGGGTGGGGAATTGAGAGG............................................................................................2311.001.001.00-----------------------------------------------------------------
.........................................................................................................................................................................................................................GGGTGGGGAATTGAGGT.............................................................................................171.000.00---------------------------1.00--------------------------------------
....................................................................................................................................................................................................................................................................................GATTCCCTCCCAGGCCACG................................191.000.00---------------------------------------1.00--------------------------
................................................................................................................................................................................................................................GAATTGAGAGGATCTGACTCTA.................................................................................221.000.00-------------------1.00----------------------------------------------
.................................................................................................................................................................................................................................AATTGAGAGGATCTGACTCTA.................................................................................211.000.00--------------------------------------1.00---------------------------
............................................................................................................................................................................................................................TGGGGAATTGAGAGGATCTGAC.....................................................................................2211.001.00--1.00---------------------------------------------------------------
.......................................................................................................................ACTCCTGGCTGGCCCCCCC.............................................................................................................................................................................................191.000.00---------------1.00--------------------------------------------------
....................................................................................................................................................................................................................CAGTGGGGTGGGGAATTGAGAGGA...........................................................................................2411.001.00--------------------------------------------1.00---------------------
.....................................................................................................................................................................................................................AGTGGGGTGGGGAATTGAGA..............................................................................................2011.001.00--------------1.00---------------------------------------------------
..................................................................................................................................................................................................................................ATTGAGAGGATCTGACTCTA.................................................................................201.000.00---------1.00--------------------------------------------------------
...............................................................................AGAAAAGGGCTCTCACCATA....................................................................................................................................................................................................................................201.000.00-----------------------------------1.00------------------------------
..................................................................................................................................................................................................................................ATTGAGAGGATCTGACGCTG.................................................................................2011.001.00--------------------------------1.00---------------------------------
............................................................................................................................................................................................................................TGGGGAATTGAGAGGATCTG.......................................................................................2011.001.00-1.00----------------------------------------------------------------
.......................................................................................................................................................................................................................TGGGGTGGGGAATTGAGAGGATTT........................................................................................2411.001.00-1.00----------------------------------------------------------------
.......................................................................................................................................................................................................................TGGGGTGGGGAATTGAGAGGATT.........................................................................................2311.001.00--------------------------1.00---------------------------------------
...................................................................................................................................................................................................................................TTGAGAGGATCTGAC.....................................................................................1540.250.25--------------------------------------------------------------0.25---
...................................................................................................................................................................................................................................TTGAGAGGATCTGACCT...................................................................................1740.250.25----------------------------------------------------------------0.25-
...................................................................................................................................................................................................................................TTGAGAGGATCTGACCTT..................................................................................1840.250.25---------------------------------------------------------------0.25--
..................................................................................................................................................................................................................................ATTGAGAGGATCTGA......................................................................................15100.100.10---------0.10--------------------------------------------------------

Antisense strand
TCCCCAGAAGGAACACAGACTCCCGCTTGGGTGAGATCCCCCGGAAAGAGGTGAGGGAAAGTCAGGCAGGGACCAGGGGAGAAAAGGGCTCTCACTGACCAGCTCCTTCACCTCTGCACACTCCTGGCTGGCCCCTCCATTCCACCCCTGCATTCTGTAGCATGGCCTTTCCTCCCTGCAGACTCATCTGGCCCTCTCCACGTGCATTTCCTCAGTGGGGTGGGGAATTGAGAGGATCTGACGCTGATTTCTTCCTCTCTCTTCCCTCAACTCTCAGATTCCCTCCCAGGCTGTCCCTCGCCGCCTTGCTACAGCCCCCAAGACTGA
.......................................................................................................................................................................................................................((((((((((((..(((((((...((........)).)))))))..))))))..)))).))...................................................
.....................................................................................................................................................................................................................214............................................................277................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343334SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR343336SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................................................................................................................................................TGCTACAGCCCCCAAGGGG.. 191.000.00-------------------------------------------------------------1.00----
...........................................................................................................................................................................................................................................................................................................GCCGCCTTGCTACAGCCCCCA....... 2111.001.00----------------------------------------------------1.00-------------
........................................................................................................................................CCATTCCACCCCTGC................................................................................................................................................................................ 1501.001.00----------------------------------------1.00-------------------------
....................................................................................................................................................................GCCTTTCCTCCCTGCAG.................................................................................................................................................. 1740.250.25-------------------0.25----------------------------------------------
.........................................................................................................................................................................................................................................................................................CCTCCCAGGCTGTCCCT............................. 1760.170.17-----------------------------------------------------------------0.17