ID: uc002daa.3
GENE: NUBP1(3)
chr16:10849378-10849627+


(3)
B-CELL
(1)
BRAIN
(8)
BREAST
(16)
CELL-LINE
(4)
CERVIX
(8)
HEART
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(27)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GGCACAAAGGGAGTTGAGTTGCATCTTTATTACCCACGCCCTAGCTGTTCACCTCCTTTTAGGAATTTCGTGGTACCATGTAAGACAATGAATTATATTTTAAAAAACCATCGTCTTACTTTGTACAATTTGTCTGTGCATGAAATGTGACCAGGGTACATGATTTCTACTAATGAACATCGGTGCTCATGTTCACACAGGTTCACCAGAGTGGCTCAGGCTGGTCTCCAGTGGTGAGTTTTCACCTCTT
.................................................................................................................................................(((((.((((((((.(((((((.......))).)))))))))).)).))))).....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189782SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189787SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
GSM532890(GSM532890)
G576T. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785TAX577738(Rovira)
total RNA. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040024(GSM532909)
G613N. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................AATGAATTATATTTTTGCG.................................................................................................................................................1923.000.0023.00----------------------------------------------------------------------------
...................................................................................................................................................................................TCGGTGCTCATGTTCACACAGA.................................................22123.004.00--3.00---2.00-1.00----1.002.00-1.00-2.00-1.00------------------1.00-------1.001.001.00--1.00---1.00--1.00-1.001.00--1.00-----------
...................................................................................................................................................................................TCGGTGCTCATGTTCACACAGT.................................................22114.004.00-1.001.00-----1.003.003.00-----1.00--------1.00------1.00--1.00-------1.00---------------------------------
.................................................................................................................................................TGTGACCAGGGTACATGATTT....................................................................................2114.004.00---------------1.00-------1.00---------1.00---------------------------------------1.00---
...................................................................................................................................................................................TCGGTGCTCATGTTCACACAG..................................................2114.004.00-2.00---------1.00----------------------------------------------1.00------------------
.................................................................................................................................................TGTGACCAGGGTACATGATT.....................................................................................2013.003.00-----------------------1.00------1.00----------1.00-----------------------------------
.....................................................................................................................................................................................GGTGCTCATGTTCACACAGA.................................................203.000.00------2.00------1.00---------------------------------------------------------------
...................................................................................................................................................................................TCGGTGCTCATGTTCACACAGTA................................................2313.004.00--------1.00---------------------------------------------------------1.00--1.00-------
...............................................................................................................................................AATGTGACCAGGGTACATGATT.....................................................................................2213.003.00-------------------------------1.00-------------------1.00-------------------1.00-----
................................................................................................................................................ATGTGACCAGGGTACATGATTT....................................................................................2213.003.00------------------------------------------------------1.00--------1.00------1.00------
..................................................................................................................................................................................ATCGGTGCTCATGTTCACACAG..................................................2213.003.00-1.00-------------------------------------------------------1.00------1.00------------
................................................................................................................................................ATGTGACCAGGGTACATG........................................................................................1812.002.00-2.00---------------------------------------------------------------------------
.................................................................................................................................................TGTGACCAGGGTACATGA.......................................................................................1812.002.00----------------------2.00------------------------------------------------------
..........GAGTTGAGTTGCATCAAG..............................................................................................................................................................................................................................181.000.00---------------------------------------------1.00-------------------------------
................................................................................................................................................ATGTGACCAGGGTACATGAT......................................................................................2011.001.00-------------------------------------1.00---------------------------------------
........................................................................................................................................................................ACTAATGAACATCGG...................................................................1511.001.00-------------------1.00---------------------------------------------------------
..................................................................................................................................................................................ATCGGTGCTCATGTTCACACAGC.................................................2311.003.00------------------------1.00----------------------------------------------------
...............................................................................................................................................................ATGATTTCTACTAATTAA.........................................................................181.000.00----------------------------------------------1.00------------------------------
..............................................................................................................................................AAATGTGACCAGGGTAC...........................................................................................1711.001.00---------------1.00-------------------------------------------------------------
..................................................................................................................................................................................ATCGGTGCTCATGTTCACAC....................................................2011.001.00-1.00---------------------------------------------------------------------------
...................................................................................................................................................................................................................TGGCTCAGGCTGGTCGGAA....................191.000.00------------------------------------------------------------1.00----------------
..................................................................................................................................................................................ATCGGTGCTCATGTTCACA.....................................................1911.001.00---1.00-------------------------------------------------------------------------
...............................................................................................................................................AATGTGACCAGGGTACATGA.......................................................................................2011.001.00--------------------------------------------------1.00--------------------------
...................................................................................................................................................................................TCGGTGCTCATGTTCACA.....................................................1811.001.00--------------------1.00--------------------------------------------------------
...............................................................................................................................................AATGTGACCAGGGTACATGAT......................................................................................2111.001.00-------------------------------------------------------------------1.00---------
............................................................................................................................................................................................................ACCAGAGTGGCTCAGGC.............................1720.500.50--------------------------------------------------------------------------0.50--
.........................................................................................................................................................................CTAATGAACATCGG...................................................................1440.250.25---0.25-------------------------------------------------------------------------
....................................................................................................................................................................................................................GGCTCAGGCTGGTCTCC.....................1770.140.14----------------------------------------------------------------------------0.14

Antisense strand
GGCACAAAGGGAGTTGAGTTGCATCTTTATTACCCACGCCCTAGCTGTTCACCTCCTTTTAGGAATTTCGTGGTACCATGTAAGACAATGAATTATATTTTAAAAAACCATCGTCTTACTTTGTACAATTTGTCTGTGCATGAAATGTGACCAGGGTACATGATTTCTACTAATGAACATCGGTGCTCATGTTCACACAGGTTCACCAGAGTGGCTCAGGCTGGTCTCCAGTGGTGAGTTTTCACCTCTT
.................................................................................................................................................(((((.((((((((.(((((((.......))).)))))))))).)).))))).....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189782SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189787SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
GSM532890(GSM532890)
G576T. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785TAX577738(Rovira)
total RNA. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040024(GSM532909)
G613N. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................TTTTAAAAAACCATCGTA....................................................................................................................................... 188.000.00-------1.00---------2.00-1.00---------1.00----1.00---1.00---1.00----------------------------------
.................................................................................................TTTTAAAAAACCATCGTAAAA.................................................................................................................................... 215.000.00----2.001.00-1.00-------------------1.00-------------------------------------------------
.................................................................................................TTTTAAAAAACCATCGTAA...................................................................................................................................... 195.000.00---1.00-2.00-1.00----1.00----------------------------------------------------------------
..................................................................................................TTTAAAAAACCATCGT........................................................................................................................................ 1614.004.00---1.00-----------------1.00----1.00---------1.00----------------------------------------
.................................................................................................TTTTAAAAAACCATCGA........................................................................................................................................ 172.000.00---------------------1.00---------------------------------1.00---------------------
.................................................................................................TTTTAAAAAACCATCGTGAA..................................................................................................................................... 202.000.00----2.00------------------------------------------------------------------------
.................................................................................................TTTTAAAAAACCATCGTAAA..................................................................................................................................... 202.000.00-----------1.00------------------------------------------------------------1.00----
....................................................................................................TAAAAAACCATCGT........................................................................................................................................ 1411.001.00------------1.00----------------------------------------------------------------
.................................................................................................TTTTAAAAAACCATCGAAAA..................................................................................................................................... 201.000.00---1.00-------------------------------------------------------------------------
.......................................................................................................................................................................................TGCTCATGTTCACACAAGTG............................................... 201.000.00-----------------------------------------------------1.00-----------------------
..............................................................................................................................................................................................................................GGTCTCCAGTGGTGACGCA......... 191.000.00----------------------------------------1.00------------------------------------
.................................................................................................TTTTAAAAAACCATCGAAAC..................................................................................................................................... 201.000.00----------------------------1.00------------------------------------------------
.................................................................................................TTTTAAAAAACCATCGAAA...................................................................................................................................... 191.000.00--------------------------------------------------------------------1.00--------
...................................................................................................TTAAAAAACCATCGT........................................................................................................................................ 1511.001.00-------1.00---------------------------------------------------------------------
...................................................................................................TTAAAAAACCATCGTGA...................................................................................................................................... 171.000.00--1.00--------------------------------------------------------------------------
.................................................................................................TTTTAAAAAACCATCGAA....................................................................................................................................... 181.000.00-----1.00-----------------------------------------------------------------------
.................................................................................................TTTTAAAAAACCATCGT........................................................................................................................................ 1711.001.00--------------------------------------------1.00--------------------------------
...................................................................................................................................................................................TCGGTGCTCATGTT......................................................... 1420.500.50---------------------------------------------------------------------------0.50-
..................................................................................................TTTAAAAAACCATCG......................................................................................................................................... 1560.330.33-----------0.33-----------------------------------------------------------------
..............................................GTTCACCTCCTTTTA............................................................................................................................................................................................. 1570.140.14------------------------0.14----------------------------------------------------