ID: uc002chm.1
GENE: PIGQ(1)
chr16:625639-625888+


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(4)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(4)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(13)
SKIN 		(2)
XRN.ip

Sense strand
CGTGTTAGTCACGTGCACTGTGAGGTGGGCGCGTTGAGCGCTGCCTACCACCACCTGGGCCACCGAGGGCCCCTCCCACCTGCCCCCTGTCCTGCTGAGCTCAGGAGTGTGGCCTGGGTGTTTGTGGTCCCCTGCACAGTGGGGGACGGTGGGAGGAGGATCTGGAGAGGGACACATCACTCCTCTCCACTCCCACGCAGAGTGTTCAAGCTCTGGCCCCTGTCCTTCCTCGGGAGCAAACTCTCCACGT
..............................................................................................................................................((((..(((((((((((((.((........)).))).)))))).))))))))........................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR189787SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR029129(GSM416758)
SW480. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782TAX577745(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGA..................................................................................23143.0043.008.0010.004.005.004.00--2.001.001.001.00-2.001.00----1.00-1.00---1.00----1.00---------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAG...................................................................................2216.006.002.00------1.00---1.00----------1.00-----1.00----------------------
................................................................................................................................................GACGGTGGGAGGAGGATCTGGAGAAC................................................................................2615.001.00-----5.00---------------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGA....................................................................................2114.004.00--3.00-----------1.00------------------------------------
................................................................................................................................................................................TCACTCCTCTCCACTCCCACGC....................................................2214.004.00------4.00--------------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGG.....................................................................................2014.004.002.001.00-------------------1.00-----------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGAAT................................................................................2512.0043.00--2.00------------------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGACAT...............................................................................2612.0043.00--------2.00------------------------------------------
.........................................................................................................................................AGTGGGGGACGGTGGGAGGAGGAT.........................................................................................2412.002.00----2.00----------------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGATA................................................................................2512.0043.00---2.00-----------------------------------------------
..................................................................................................................................................................................ACTCCTCTCCACTCCCACGCAGA.................................................2312.002.00---------------2.00-----------------------------------
............................................................................................................................................................AGGATCTGGAGAGGGACACA..........................................................................2012.002.00---------2.00-----------------------------------------
.............................................................................................................................................GGGGACGGTGGGAGGCCGG..........................................................................................192.000.00---------------------------------1.00--------1.00--------
................................................................................................................................................................TCTGGAGAGGGACACATC........................................................................1811.001.00-------------------1.00-------------------------------
........................................................................................................................................................................................................AGTGTTCAAGCTCTGGAGCT..............................201.000.00-------------------------1.00-------------------------
.........................................................................................................................................AGTGGGGGACGGTGGGAGGAGGAAAGT......................................................................................2711.001.00--------------1.00------------------------------------
..................................................................................................................................................CGGTGGGAGGAGGATCTGGAGAGA................................................................................241.000.00----------1.00----------------------------------------
.......................................................................................................................................................................................TCTCCACTCCCACGCTC..................................................171.000.00------------------------------1.00--------------------
.........................................................................................................................................AGTGGGGGACGGTGGATT...............................................................................................181.000.00--------------------------------------1.00------------
...................................................................................................................................................................................................................TCTGGCCCCTGTCCTTTTTG...................201.000.00----------------------------------------1.00----------
.............................................................................................................................................................................................................................GTCCTTCCTCGGGAG..............1541.001.00-------------------------------------------0.500.50------
...............................................................................................................................................GGACGGTGGGAGGAGGATCTGGAGAGGGAC.............................................................................3011.001.00-----------------------1.00---------------------------
...........................................................................................................................................................GAGGATCTGGAGAGGGAC.............................................................................1811.001.00-------------------------------------1.00-------------
................................................................................................................................................................................TCACTCCTCTCCACTCCCACGCA...................................................2311.001.00-------------1.00-------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGTAAA..................................................................................2311.001.00----1.00----------------------------------------------
................................................................................................................................................GACGGTGGGAGGAGGATCTGTAG...................................................................................231.000.00----------------1.00----------------------------------
.......................................................................................................................................................................................TCTCCACTCCCACGCGC..................................................171.000.00-------------------------------1.00-------------------
....................................................................................................................................................................................TCCTCTCCACTCCCACGCAGCTTT..............................................2411.001.00-----------1.00---------------------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAGT..................................................................................2311.006.00----------------------------------1.00----------------
.........................................................................................................................................AGTGGGGGACGGTGGGAGGAGGA..........................................................................................2311.001.001.00--------------------------------------------------
....................................................................................................................................................................................TCCTCTCCACTCCCACGCAG..................................................2011.001.00-----1.00---------------------------------------------
.........................................................................................................................................AGTGGGGGACGGTGGGAGGAGGAAT........................................................................................2511.001.001.00--------------------------------------------------
....................................................................................................................................................................................TCCTCTCCACTCCCACGCAGAAA...............................................231.000.00-----------------------------------1.00---------------
................................................................................................................................................GACGGTGGGAGGAGGATCTGGAGA..................................................................................2411.001.00-----1.00---------------------------------------------
............................................................................................................................................................................................................................TGTCCTTCCTCGGGAGC.............1711.001.00-----------------------------------------1.00---------
.................................................................................................................................................ACGGTGGGAGGAGGATCTGGAT...................................................................................2211.004.00--------------------------1.00------------------------
.................................................................................................................................................ACGGTGGGAGGAGGATCTG......................................................................................1911.001.00---------------------------------------1.00-----------
................................................................................................................................................................................TCACTCCTCTCCACTCCCACGCAT..................................................2411.001.00---------------------------1.00-----------------------
............................................................................................................................................................................................................................TGTCCTTCCTCGGGAG..............1620.500.50-----------------0.50---------------------------------
.............................................TACCACCACCTGGGC..............................................................................................................................................................................................1560.170.17--------------------0.17------------------------------
.............................................................................................................................................................................................................................GTCCTTCCTCGGGA...............1480.120.12--------------------------------------------------0.12

Antisense strand
CGTGTTAGTCACGTGCACTGTGAGGTGGGCGCGTTGAGCGCTGCCTACCACCACCTGGGCCACCGAGGGCCCCTCCCACCTGCCCCCTGTCCTGCTGAGCTCAGGAGTGTGGCCTGGGTGTTTGTGGTCCCCTGCACAGTGGGGGACGGTGGGAGGAGGATCTGGAGAGGGACACATCACTCCTCTCCACTCCCACGCAGAGTGTTCAAGCTCTGGCCCCTGTCCTTCCTCGGGAGCAAACTCTCCACGT
..............................................................................................................................................((((..(((((((((((((.((........)).))).)))))).))))))))........................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR189787SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR029129(GSM416758)
SW480. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782TAX577745(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
..................................TGAGCGCTGCCTAC.......................................................................................................................................................................................................... 1452.202.20-----------------0.800.200.20-------------------------0.200.200.200.200.20-
................................................................................TGCCCCCTGTCCTGCCAG........................................................................................................................................................ 181.000.00------------------------------------1.00--------------
........................................................................CTCCCACCTGCCCCCTGTCGCT............................................................................................................................................................ 221.000.00----------------1.00----------------------------------
.............................................TACCACCACCTGGGCTTG........................................................................................................................................................................................... 1861.000.00--------------------------------1.00------------------
.................................................................................GCCCCCTGTCCTGCTG......................................................................................................................................................... 1670.140.14---------------------------------------------0.14-----