ID: uc002cgm.4
GENE: ARHGDIG(4)
chr16:332481-332664+


(2)
AGO2.ip
(2)
BRAIN
(5)
BREAST
(10)
CELL-LINE
(11)
CERVIX
(1)
HEART
(1)
LIVER
(2)
OTHER
(5)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
TGTCAGCGGCCTCAAGTGTCTGCACCACACCTACCGCCGGGGCCTGCGCGGTGAGGGCAGCGGTGGGGGGAACGGGGCGGGGGGGGGAAGCGGGGGCAGACAGAGGACAGCTCTGATGCCCTCGCCCTCCCTAGTGGACAAGACCGTCTACATGGTGGGCAGCTATGGCCCGAGCGCCCAGGAG
................................................................................(((((((..(((((((((..(((((.....))))).))))))))))))))))....................................................
......................................................................71.............................................................134................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040019(GSM532904)
G701T. (cervix)
SRR189784SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040020(GSM532905)
G699N_2. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR553574(SRX182780)
source: Heart. (Heart)
SRR037935(GSM510473)
293cand3. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR037936(GSM510474)
293cand1. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577738(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR343335GSM532875(GSM532875)
G547N. (cervix)
SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577745(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040008(GSM532893)
G727N. (cervix)
SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577741(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
...........................................................................GGCGGGGGGGGGAAGGGT...........................................................................................189.000.008.00-----------------------------1.00-------------
.................................................................................................................TGATGCCCTCGCCCTCCCTAGT.................................................2215.005.00-3.00-2.00----------------------------------------
..................................................................................................................GATGCCCTCGCCCTCCCTAGT.................................................2115.005.00-1.00-1.002.00--------------------1.00------------------
.................................................................................................................TGATGCCCTCGCCCTCCCTAG..................................................2113.003.00-1.00--1.001.00--------------------------------------
.................................................................................................................TGATGCCCTCGCCCTCCCTAGA.................................................2213.003.00-1.00-2.00----------------------------------------
................................................................................................................CTGATGCCCTCGCCCTCCCTAGT.................................................2313.003.00--3.00-----------------------------------------
..................................................................................................................GATGCCCTCGCCCTCTAGT...................................................191.000.00-----------------1.00--------------------------
...............................................................................GGGGGGGGAAGCGGGGTCA......................................................................................191.000.001.00-------------------------------------------
......................................................................AACGGGGCGGGGGGGGGAGTG.............................................................................................211.000.00--------------------------------1.00-----------
..............................................................................GGGGGGGGGAAGCGGGGGG.......................................................................................191.000.00--------1.00-----------------------------------
..............................................................................GGGGGGGGGAAGCGGGGGT.......................................................................................191.000.00--------1.00-----------------------------------
..............................................................................GGGGGGGGGAAGCGGGG.........................................................................................1711.001.00------------1.00-------------------------------
..........................................................................GGGCGGGGGGGGGAAGCGGGGA........................................................................................221.000.00-------1.00------------------------------------
........................................................................CGGGGCGGGGGGGGGATTTT............................................................................................201.000.00--------------------1.00-----------------------
..................................................................................................................GATGCCCTCGCCCTCCCTAA..................................................201.000.00---1.00----------------------------------------
.......................................................................ACGGGGCGGGGGGGGAGC...............................................................................................181.000.00-----1.00--------------------------------------
..................................................................................................................GATGCCCTCGCCCTCCTTAG..................................................201.000.00----1.00---------------------------------------
....................................................................................GGGAAGCGGGGGCAGATAT.................................................................................191.000.00------1.00-------------------------------------
.......................................................................................AAGCGGGGGCAGACAGAGGACA...........................................................................2211.001.00---------------------------------1.00----------
.................................................................................................................TGATGCCCTCGCCCTCCCTAGATA...............................................2411.003.00------------------1.00-------------------------
.......................................................................................AAGCGGGGGCAGACAGAGGACAGCTCTGATC..................................................................311.000.00----------------1.00---------------------------
................................................................................................................CTGATGCCCTCGCCCTCCCTAGTT................................................2411.003.00--1.00-----------------------------------------
.................................................................................................................TGATGCCCTCGCCCTCCCTAT..................................................211.000.00-1.00------------------------------------------
...........................................................................GGCGGGGGGGGGAAGGT............................................................................................171.000.001.00-------------------------------------------
.................................................................................GGGGGGAAGCGGGGGTGT.....................................................................................181.000.00-----------------------------------1.00--------
................................................................................................................CTGATGCCCTCGCCCTCCCTAGTAA...............................................2511.003.00--1.00-----------------------------------------
...........................................................................GGCGGGGGGGGGAAGGGTA..........................................................................................191.000.00-------------------1.00------------------------
.................................................................................................................TGATGCCCTCGCCCTCCCTATA.................................................221.000.00---------------1.00----------------------------
..................................................................................................................GATGCCCTCGCCCTCCCTAG..................................................2011.001.00----1.00---------------------------------------
.................................................................................................................TGATGCCCTCGCCCTCCCTAGC.................................................2211.003.00-------------------------------1.00------------
................................................................................................................CTGATGCCCTCGCCCTCCCTAGA.................................................231.000.00--1.00-----------------------------------------
...........................................................................GGCGGGGGGGGGAAGTG............................................................................................171.000.001.00-------------------------------------------
........................................................................................................................................GACAAGACCGTCTACACCCC............................201.000.00------------------------------------1.00-------
..............................................................................GGGGGGGGGAAGCGGGGC........................................................................................1811.001.00------1.00-------------------------------------
............................ACCTACCGCCGGG...............................................................................................................................................1320.500.50-----0.50--------------------------------------
...............................................................................GGGGGGGGAAGCGGG..........................................................................................1530.330.33----------------------------------------0.33---
....................................CCGGGGCCTGCGCGG.....................................................................................................................................1580.250.25----------0.25---------------------------------
..........................................................................................CGGGGGCAGACAGAGG..............................................................................1660.170.17-------------------------------------------0.17

Antisense strand
TGTCAGCGGCCTCAAGTGTCTGCACCACACCTACCGCCGGGGCCTGCGCGGTGAGGGCAGCGGTGGGGGGAACGGGGCGGGGGGGGGAAGCGGGGGCAGACAGAGGACAGCTCTGATGCCCTCGCCCTCCCTAGTGGACAAGACCGTCTACATGGTGGGCAGCTATGGCCCGAGCGCCCAGGAG
................................................................................(((((((..(((((((((..(((((.....))))).))))))))))))))))....................................................
......................................................................71.............................................................134................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040019(GSM532904)
G701T. (cervix)
SRR189784SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040020(GSM532905)
G699N_2. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR553574(SRX182780)
source: Heart. (Heart)
SRR037935(GSM510473)
293cand3. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR037936(GSM510474)
293cand1. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577738(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR343335GSM532875(GSM532875)
G547N. (cervix)
SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577745(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040008(GSM532893)
G727N. (cervix)
SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577741(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................................TGGCCCGAGCGCCCAGCTCC 202.000.00---------2.00----------------------------------
............................................................................................................................................AGACCGTCTACATGGTGG.......................... 1811.001.00-----------------------1.00--------------------
................................................................GGGGGGAACGGGGCGGTCCT.................................................................................................... 201.000.00-------------------------------------1.00------
....................................................GAGGGCAGCGGTGGGCAGA................................................................................................................. 191.000.00-----------------------------1.00--------------
.................................................................................GGGGGGAAGCGGGGGCGGCT................................................................................... 201.000.00----------------------1.00---------------------
...........................................................GCGGTGGGGGGAACGGCGCG......................................................................................................... 201.000.00-----1.00--------------------------------------
.................................................................GGGGGAACGGGGCGGGGGGG................................................................................................... 2011.001.00-----------1.00--------------------------------
..............................................CGCGGTGAGGGCAGCGTT........................................................................................................................ 181.000.00-------------1.00------------------------------
........................................................................CGGGGCGGGGGGGGGGGCG............................................................................................. 191.000.00-------1.00------------------------------------
..........................................................................GGGCGGGGGGGGGAAGCGGT.......................................................................................... 201.000.00----------------------------1.00---------------
................................................................................GGGGGGGAAGCGGGGGGTCC.................................................................................... 201.000.00--------------1.00-----------------------------
.............................................................................CGGGGGGGGGAAGCGGGCCC....................................................................................... 201.000.00------------------------1.00-------------------
.........................................................................GGGGCGGGGGGGGGA................................................................................................ 1501.001.00--------------------------1.00-----------------
............................................................................GCGGGGGGGGGAAGCGC........................................................................................... 171.000.00----------1.00---------------------------------
........................................................................CGGGGCGGGGGGGGGACG.............................................................................................. 181.000.00---------------------1.00----------------------
........................................................................CGGGGCGGGGGGGGGACGCG............................................................................................ 201.000.00------1.00-------------------------------------
....................................................................GGAACGGGGCGGGGGGGGGATG.............................................................................................. 221.000.00---------------------------1.00----------------
.......................................................................ACGGGGCGGGGGGGGGACCG............................................................................................. 201.000.00----------------------------------1.00---------
....................................................................................................................TGCCCTCGCCCTCCCT.................................................... 1620.500.50--------------------------------------0.50-----
................................................................GGGGGGAACGGGGCGTCC...................................................................................................... 180.330.00-----------------------------------------0.33--
................................................................GGGGGGAACGGGGCGTC....................................................................................................... 170.330.00---------------------------------------0.33----
................................................................GGGGGGAACGGGGCG......................................................................................................... 1530.330.33------------------------------------------0.33-