| (1) AGO1.ip OTHER.mut | (1) B-CELL | (9) CELL-LINE | (1) CERVIX | (1) FIBROBLAST | (2) OTHER | (2) RRP40.ip | (3) SKIN | (1) XRN.ip |
| GGGAGTCCCACAGCAACCATGTACCCAGTGCTGTTCACTGACTGGACCACCCATGAGAGACACTCTGGAGACAGATGTGGGGATGAGAGGTGGAAGATGCTCTTTCACCGTATGGGTGATGCTTTGAAAGGGGTTGGAGATGAGTCTTGATATTGTGACCGAGACTTATGGTTTTCTTCCCTTTTCACTTCCCTGAACAGGTGCAGTGCCATACTTACACTGGGTACTGCTGGTGTGTCACCCCGGATGG ........................................................................................................................(((((....))))).....((((((((((..........))))))))))................................................................................. ......................................................................................................................119....................................................174.......................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189787 | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | SRR040039(GSM532924) G531T. (cervix) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189782 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................TTGAAAGGGGTTGGAGATGAGT......................................................................................................... | 22 | 1 | 45.00 | 45.00 | 44.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TTTGAAAGGGGTTGGAGATGAGT......................................................................................................... | 23 | 1 | 40.00 | 40.00 | 37.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TTGAAAGGGGTTGGAGATGAG.......................................................................................................... | 21 | 1 | 19.00 | 19.00 | 11.00 | 7.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TTGAAAGGGGTTGGAGATGAGTC........................................................................................................ | 23 | 1 | 16.00 | 16.00 | 16.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TTTGAAAGGGGTTGGAGATG............................................................................................................ | 20 | 1 | 11.00 | 11.00 | - | 10.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TTGAAAGGGGTTGGAGAT............................................................................................................. | 18 | 1 | 6.00 | 6.00 | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TTTGAAAGGGGTTGGAGAT............................................................................................................. | 19 | 1 | 6.00 | 6.00 | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TTTGAAAGGGGTTGGAGATGA........................................................................................................... | 21 | 1 | 6.00 | 6.00 | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TTGAAAGGGGTTGGAGATGAGTCT....................................................................................................... | 24 | 1 | 6.00 | 6.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TTGAAAGGGGTTGGAGATG............................................................................................................ | 19 | 1 | 5.00 | 5.00 | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TTGAAAGGGGTTGGAGATGAGTCAT...................................................................................................... | 25 | 1 | 4.00 | 16.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TTGAAAGGGGTTGGAGATGA........................................................................................................... | 20 | 1 | 4.00 | 4.00 | - | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TTTGAAAGGGGTTGGAGATGAGTC........................................................................................................ | 24 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................ATATTGTGACCGAGACTTATG................................................................................ | 21 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TTACACTGGGTACTGCTG.................. | 18 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGAAAGGGGTTGGAGATGAG.......................................................................................................... | 20 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................ACACTGGGTACTGCTGGGTTT............. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ............................................................................................................................TGAAAGGGGTTGGAGATGAT.......................................................................................................... | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................TTGAAAGGGGTTGGAGA.............................................................................................................. | 17 | 2 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TTTTCTTCCCTTTTCACTTTTCG........................................................ | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................TTTGAAAGGGGTTGGAGATGAGA......................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................TTGAAAGGGGTTGGAGATGAGTCTT...................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................CCATACTTACACTGGGTACTGCTGGTG............... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................................................................................................................................................................AACAGGTGCAGTGCCC....................................... | 16 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ........................................................................AGATGTGGGGATGAGAGGTGGAAGATG....................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................................................................................TTTGAAAGGGGTTGGAGATGAGTT........................................................................................................ | 24 | 1 | 1.00 | 40.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGAAAGGGGTTGGAGATGAGT......................................................................................................... | 21 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TTTTCTTCCCTTTTCACTCTG.......................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................TTTGAAAGGGGTTGGAGATGAGTCA....................................................................................................... | 25 | 1 | 1.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGAAAGGGGTTGGAGAT............................................................................................................. | 17 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GGGAGTCCCACAGCAACCATGTACCCAGTGCTGTTCACTGACTGGACCACCCATGAGAGACACTCTGGAGACAGATGTGGGGATGAGAGGTGGAAGATGCTCTTTCACCGTATGGGTGATGCTTTGAAAGGGGTTGGAGATGAGTCTTGATATTGTGACCGAGACTTATGGTTTTCTTCCCTTTTCACTTCCCTGAACAGGTGCAGTGCCATACTTACACTGGGTACTGCTGGTGTGTCACCCCGGATGG ........................................................................................................................(((((....))))).....((((((((((..........))))))))))................................................................................. ......................................................................................................................119....................................................174.......................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189787 | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | SRR040039(GSM532924) G531T. (cervix) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189782 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................ACTGGACCACCCATGAGGTA.............................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ...........................................................................................................................................................................................CTTCCCTGAACAGGTGGCC............................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ........................................ACTGGACCACCCATGGGT................................................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................GGTGCAGTGCCATACGGG................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .............................................................................................................GTATGGGTGATGCTT.............................................................................................................................. | 15 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................ACTGGACCACCCATGAGGTT.............................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................CTGGACCACCCATGA.................................................................................................................................................................................................. | 15 | 6 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |