ID: uc001war.28
GENE: CHD8(28)
chr14:21881106-21881355-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(5)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(7)
BRAIN 		(5)
BREAST 		(23)
CELL-LINE 		(3)
HEART 		(5)
HELA 		(5)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGGTAGCAGGTGAGAAGTCAGGTATAGACCCTGGTAAATTCATAGGATTTGCTGTTATGAAAAAGGAGAACACCCATCGGATAGCTTCTAATTTCTTTAAAAATTTTGAAGTAGGATTCTCTGCTAAAGGTGAGGTAGAGGAGTGGGTTTACTGGACAGTGATCTTTTGGTCTTATTGTTTGGTTTCCTAACTCATCTAGGATGAAGAGCCCTTTAATCCAGACTACGTAGAGGTGGATAGGATATTGGA
.......................................................................................................................................((((.(((((((...((..((((((((((....))))..))))))..))..)))).))).))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189783SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR038861(GSM458544)
MM466. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR029131(GSM416760)
MCF7. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGAC.............................................................................................22130.0030.00-5.005.00--4.002.00------1.002.00----1.00------2.00--1.00-1.001.00--1.001.00----1.00-1.00---------------------------1.00------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTAGT.................................................22115.0011.001.00---6.00---3.00---------------------1.00------1.00------1.00----1.00---1.00------------------------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTAG..................................................21111.0011.006.00--------3.00-1.00---------------------------------------------1.00--------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGA..............................................................................................2117.007.00----------------2.00-----------------1.00----1.00-----1.001.00---1.00---------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGACAGT..........................................................................................2516.006.00--2.00----------1.00-------1.00--2.00-----------------------------------------------------
......................................................................................................................................GTAGAGGAGTGGGTTTACTGGAC.............................................................................................2316.006.00-4.00------------------2.00---------------------------------------------------------
..................................................................................................................................................................................TTTGGTTTCCTAACTCATCTAG..................................................2214.004.002.00----------2.00------------------------------------------------------------------
............................................................................................................................................................................................................................AGACTACGTAGAGGTGGATAGGATA.....2513.003.00-----2.00-1.00----------------------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACT.................................................................................................1813.003.00----------1.00-------2.00-----------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTAC..................................................................................................1712.002.00----------2.00-------------------------------------------------------------------
......................................................................................................................................GTAGAGGAGTGGGTTTACT.................................................................................................1912.002.00----------------------2.00-------------------------------------------------------
............................................................................................................................................................................................................................AGACTACGTAGAGGTGGATAGGATATTGG.2912.002.00------------2.00-----------------------------------------------------------------
......................................................................................................................................GTAGAGGAGTGGGTTTACTGGAAA............................................................................................2412.002.00---------------2.00--------------------------------------------------------------
......................................................................................................................................GTAGAGGAGTGGGTTTACTGGA..............................................................................................2212.002.00----------------------------------------------------------1.00---1.00---------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGG...............................................................................................2012.002.00-----------------------2.00------------------------------------------------------
.............................................................................................................................................................................................................AGAGCCCTTTAATCCAGACTACGTAGAGGTGG.............3211.001.00------1.00-----------------------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGAA.............................................................................................2211.007.00-----------------------------------------------1.00------------------------------
..........................................................................................................................................................................................CCTAACTCATCTAGGATGAAGAGCCCT.....................................2711.001.00--------------------------------------------------------1.00---------------------
......................................................................................................................................................................................................AGGATGAAGAGCCCTTT...................................1711.001.00-----------------1.00------------------------------------------------------------
.................................................................................................................................................................................................................................ACGTAGAGGTGGATAGGATA.....2011.001.00----------------------------------------------------------------------1.00-------
..............................................................AAGGAGAACACCCATCGGATAGC.....................................................................................................................................................................2311.001.00-------------------------------------------------------1.00----------------------
.......................................................................................................................................................................................................................AATCCAGACTACGTAGAGGT...............2011.001.00-------------------------1.00----------------------------------------------------
.............................................................................................................................................................................................................AGAGCCCTTTAATCCAGACT.........................2011.001.00------------------------------------------------1.00-----------------------------
.................................................................................................................GGATTCTCTGCTAAAGGTGAGGTAG................................................................................................................2511.001.00------------------------------------------------------------1.00-----------------
............................................................................................................................................................................................................................AGACTACGTAGAGGTGGATA..........2011.001.00-------1.00----------------------------------------------------------------------
..................................................................................................................................TGAGGTAGAGGAGTGGGTAGTT..................................................................................................221.000.00----------------------------------------1.00-------------------------------------
......................................................................................................................................................................................................................................GAGGTGGATAGGATATT...1721.001.00-----------------------------------------------------------1.00------------------
......................................................................................TCTAATTTCTTTAAAACCAC................................................................................................................................................201.000.00---------------------------------1.00--------------------------------------------
...........................................................................................................................................................................................................................CAGACTACGTAGAGGTGGATAG.........2211.001.00-------1.00----------------------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGACA............................................................................................2311.001.00--1.00---------------------------------------------------------------------------
..................................................................................................................................................................................................................................CGTAGAGGTGGATAGG........1611.001.00-------------------------1.00----------------------------------------------------
......................................................................CACCCATCGGATAGCT....................................................................................................................................................................1611.001.00--------------------------------------1.00---------------------------------------
................................................................................................................................................................................................................................TACGTAGAGGTGGATAGGATATTT..241.000.00---------------------------1.00--------------------------------------------------
.....................................................................................................................................................................................................................TTAATCCAGACTACGTAGAGGT...............2211.001.00-------------------1.00----------------------------------------------------------
.......................................................................................................................................................................................................................AATCCAGACTACGTAGAGGTGGAT...........2411.001.00------------------------------------------------------------------------1.00-----
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGACAGTGAT.......................................................................................2811.001.00---------------------1.00--------------------------------------------------------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTAAT.................................................221.000.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................TTTAATCCAGACTACGTAGAGG................2211.001.00---------------------------------------------------1.00--------------------------
........................................................................................................................CTGCTAAAGGTGAGGTAGAGGAGTGGG.......................................................................................................2711.001.00----------------------------------------------------1.00-------------------------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTAGC.................................................2211.0011.00----------------------------------------------------------------1.00-------------
..................................................................................................................................TGAGGTAGAGGAGTGTAA......................................................................................................181.000.00-----------------1.00------------------------------------------------------------
......................................................................................................................................................................................................AGGATGAAGAGCCCTTTAATC...............................2111.001.00--------------------------------------------------------------------1.00---------
......................................................................................................................................GTAGAGGAGTGGGTTTACTGGAAT............................................................................................2411.002.00------------------------------------------------------------------1.00-----------
..................................................................................................................................TGAGGTAGAGGAGTGGATGG....................................................................................................201.000.001.00-----------------------------------------------------------------------------
..................................................................................................................................................................................TTTGGTTTCCTAACTCATCTAGT.................................................2311.004.00-----------------------------------------------------------------1.00------------
............................................................................................................................TAAAGGTGAGGTAGAGGAGTG.........................................................................................................2111.001.00------------------------------------------------------1.00-----------------------
...................................................................................................................................................................................TTGGTTTCCTAACTCATCTATT.................................................221.000.00--------1.00---------------------------------------------------------------------
.............................................................................................................................AAAGGTGAGGTAGAGGAGTG.........................................................................................................2011.001.00---------------------------1.00--------------------------------------------------
.............................................................................................................................................................................................................................GACTACGTAGAGGTGGATAGGATATTG..2711.001.00-------1.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................TCCAGACTACGTAGAGGTGGATAGGA.......2611.001.00------------------------------------------1.00-----------------------------------
..........................................TAGGATTTGCTGTTATGAAAAAGGAGAACACCC...............................................................................................................................................................................3311.001.00------1.00-----------------------------------------------------------------------
.......................................................................................................................................TAGAGGAGTGGGTTTACTGGACAG...........................................................................................2411.001.00------1.00-----------------------------------------------------------------------
..................................................................................................................................TGAGGTAGAGGAGTGTAGA.....................................................................................................191.000.00-------------------------------------------------------------------1.00----------
.................................................................................................................................................GGTTTACTGGACAGTGA........................................................................................1720.500.50-------------------------------------------------------------------------0.50----
.........................................................................................................................................................................................................ATGAAGAGCCCTTTAAT................................1730.330.33--------------------------------------------------------------------------0.33---
...........................................................................................................................................................................................................................CAGACTACGTAGAG.................1440.250.25---------------------------------------------------------------------------0.25--

Antisense strand
TGGTAGCAGGTGAGAAGTCAGGTATAGACCCTGGTAAATTCATAGGATTTGCTGTTATGAAAAAGGAGAACACCCATCGGATAGCTTCTAATTTCTTTAAAAATTTTGAAGTAGGATTCTCTGCTAAAGGTGAGGTAGAGGAGTGGGTTTACTGGACAGTGATCTTTTGGTCTTATTGTTTGGTTTCCTAACTCATCTAGGATGAAGAGCCCTTTAATCCAGACTACGTAGAGGTGGATAGGATATTGGA
.......................................................................................................................................((((.(((((((...((..((((((((((....))))..))))))..))..)))).))).))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189783SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR038861(GSM458544)
MM466. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR029131(GSM416760)
MCF7. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................CTTTTGGTCTTATTGGATC.................................................................... 198.000.00---8.00--------------------------------------------------------------------------
.........................................................................................................................................GAGGAGTGGGTTTACTGGAC............................................................................................. 2011.001.00---------------------------------------------------------------1.00--------------
...............................................................................................................................................................................................CTCATCTAGGATGAAGCAT........................................ 191.000.00---------------------------------------------------------------------1.00--------
.......................................................................................................................................................................TGGTCTTATTGTTTGGCT................................................................. 181.000.00-------------------------------------------------------------1.00----------------
............................................................................................................AAGTAGGATTCTCTGATG............................................................................................................................ 181.000.001.00-----------------------------------------------------------------------------
.....................................................................................................................TCTCTGCTAAAGGTGCT.................................................................................................................... 171.000.00----------------------------1.00-------------------------------------------------
...............................................................................................................................................................................................................AGCCCTTTAATCCAG............................ 1560.170.17-----------------------------------------------------------------------------0.17
..............................................................................................................................................................................................ACTCATCTAGGATGA............................................. 1560.170.17----------------------------------------------------------------------------0.17-