ID: uc001uje.5
GENE: ULK1(5)
chr12:132393313-132393492+


(3)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(2)
AGO3.ip
(3)
B-CELL
(5)
BRAIN
(24)
BREAST
(42)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(8)
HEART
(4)
HELA
(9)
LIVER
(3)
OTHER
(1)
RRP40.ip
(46)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CAACCCCGCCGGCCGCCGCGCCAACCCCAACAGCATCCGCGTCAAGATCGGTCAGCCCGCGGGCAGGCAGGCGGGCCCGGCGGGGAGGGGCTCCGGGGCCGGCGCCGGTCCTGACGCTTCTCTCCCGCAGCTGACTTCGGCTTCGCGCGGTACCTCCAGAGCAACATGATGGCGGCCACA
.....................................................................((....))..((((((((..((..((((((((....))))))))..))..))).)))))....................................................
...................................................................68............................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029131(GSM416760)
MCF7. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189786SRR040032(GSM532917)
G603N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR189783GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
............................................................................................................TCCTGACGCTTCTCTCCCGCAGT.................................................23150.0043.00-----1.00-2.003.00---1.002.00-1.00--1.001.00----1.002.00-2.002.00----------1.00--2.00-1.002.00----1.001.00---2.001.00-1.00---1.00------1.00-----------1.001.001.00-----1.00---1.00--------1.001.00------1.00------1.00------------1.00-----1.00--1.001.001.00-1.00-1.001.00---------
............................................................................................................TCCTGACGCTTCTCTCCCGCAG..................................................22143.0043.001.008.00--2.004.001.00--2.00------2.002.001.001.00--1.00--1.001.00---1.00-------------1.00----1.00--2.002.001.00-------------------------1.00----1.00----1.00-1.00------------1.00------1.00-------------------1.00---------1.00-------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGA.................................................23123.0043.00------4.00----1.002.00----1.00--------1.001.00--1.00----------------2.001.00--------1.00------1.00----------1.001.00-------------------1.00-------1.00----1.00------------1.00--1.00------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCG.....................................................19122.0022.0014.00-----------1.00-------2.00-----------2.00----------2.00----------------------------1.00-----------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCA...................................................21115.0015.00-------2.002.00------1.001.00--1.00------1.00-1.001.00---------------------------1.00-----------------------------1.00------------------1.00-------------------1.00-------1.00---------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGT.................................................22112.001.00----1.00--------1.001.00---------------------1.002.00----------------1.00-1.00-------------1.00-------1.001.00---------------------1.00------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGC....................................................2019.009.00-2.00------------------------------1.00---------------1.00----------------1.001.00------------------------1.00-----1.00-----------------1.00----------------------------------------
............................AACAGCATCCGCGTCAAGATCGG.................................................................................................................................2319.009.00--9.00---------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAT..................................................2217.0015.00-------1.00---------------------2.00-----------------------------------------------1.00-------------------------------------------------1.001.00---------------1.00-----------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTT................................................2416.0043.00--------------1.00-------1.00---------------------------1.00--------------------1.00--------------1.00---------------------------------1.00-----------------------------------
.................................CATCCGCGTCAAGATCG..................................................................................................................................1715.005.00--------------------------------------1.00--1.00--------------------------------------------------------1.00--------------1.00-------1.00----------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTA................................................2414.0043.00---------------------2.00-------------------------------------------------------------------------------------------------1.00---------------------------1.00--------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGA.................................................2214.001.00---------1.00------------1.00-----------------1.00----------------------------------------------------------------------1.00--------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATT.................................................2313.0015.00----------------------------------------------1.00-----------------------------------------------------1.00----------------------------1.00--------------------------
........................................................................GGGCCCGGCGGGGAGGGT..........................................................................................183.000.00----------3.00-------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAG...................2312.002.00--------------2.00---------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCG.....................................................1812.002.002.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCA...................................................2012.002.00----------------------------------------------1.00---------------------1.00---------------------------------------------------------------------------------------
........................CCCCAACAGCATCCGCGTCAAGATCG..................................................................................................................................2612.002.00------------------------------------------------------------1.00--------------------------------------------------------------------------1.00--------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTAT...............................................2512.0043.00-----1.00--------------------------------1.00---------------------------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAG..................................................2012.002.00----------------------------------1.00-------------------------------------------------------------------------1.00-----------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGC.................................................2312.002.00------------------------------------1.00----------------------------------------------------------------------------------------------------1.00------------------
............................................................................................................TCCTGACGCTTCTCTCCCCA....................................................201.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
...CCCCGCCGGCCGCCGGGC...............................................................................................................................................................181.000.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................CGGGCCCGGCGGGGAGGGT..........................................................................................191.000.00----------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
................CGCGCCAACCCCAACAGCATCCGCGT..........................................................................................................................................2611.001.00------------------------------------------------------------------------------------1.00-----------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCACTT................................................2411.0015.00-------------------------------------------------------------------1.00----------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATAA................................................2411.0015.00------------------------------------------------------------------------------------------------------------------1.00-----------------------------------------
...........................................................................CCCGGCGGGGAGGGGCCGC......................................................................................191.000.00---------------------------------------------------1.00--------------------------------------------------------------------------------------------------------
........................................................................GGGCCCGGCGGGGAGGGC..........................................................................................181.000.00----------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
...............................AGCATCCGCGTCAAGATCG..................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------------------------------------1.00-------------------------------
...........................................................................CCCGGCGGGGAGGGGCTC.......................................................................................1811.001.00---------------------------------------1.00--------------------------------------------------------------------------------------------------------------------
..........................................................................GCCCGGCGGGGAGGGT..........................................................................................161.000.00---------------------------------1.00--------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAGTTT...............................................2311.002.00-----------------------------------------------------------1.00------------------------------------------------------------------------------------------------
.........................................................................................................CGGTCCTGACGCTTCTCTCCCGCAGA.................................................261.000.00-------------1.00----------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................GGCGGGCCCGGCGGGGGCGG...........................................................................................201.000.00----------------------------------------------------------------------------------------------------------------------1.00-------------------------------------
..............................................................................................................................................................GAGCAACATGATGGCGGCCAC.2111.001.00------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCC...................................................2111.009.00---------------------------------------------------------------1.00--------------------------------------------------------------------------------------------
..............................................ATCGGTCAGCCCGCGGGCAGGC................................................................................................................2211.001.00-------------------------------------------------------------------------------------------------------------------------------------1.00----------------------
.......................................................................................................................................................ACCTCCAGAGCAACATGA...........1811.001.00-----------------------1.00------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGATT...............................................2511.0043.00----------------------------------------1.00-------------------------------------------------------------------------------------------------------------------
........................CCCCAACAGCATCCGCGTCAAGATC...................................................................................................................................2511.001.00----------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCT...................................................2111.009.00------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAGCAACA..............2811.001.00----1.00-------------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................GGTCCTGACGCTTCTCTCCCGCAGA.................................................251.000.00--------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTAAT..............................................2611.0043.00-----------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.........................................................................GGCCCGGCGGGGAGGTGG.........................................................................................181.000.00-----------------------------------------1.00------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGAT................................................2311.001.00-----------------------------------------------------------------------------------------------------------------------------------1.00------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGAT................................................2411.0043.00----------------------------------------------------------------------------------------1.00-------------------------------------------------------------------
........................................................CCGCGGGCAGGCAGGCG...........................................................................................................1711.001.00--------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAGCAACAT.............2911.001.00------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................CTGACTTCGGCTTCGCGCGGTACC..........................2411.001.00----1.00-------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................GGCCGGCGCCGGTCCGGCT.................................................................191.000.00-----------------------------------------------------------------------------------------------------------1.00------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGTAG..................................................2211.0022.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.......................ACCCCAACAGCATCCGCGTCA........................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------------1.00------------------------------------------------------------
..........................................................................GCCCGGCGGGGAGGGTGG........................................................................................181.000.00---------------------------------1.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................GGCCCGGCGGGGAGGTG..........................................................................................171.000.00------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATA.................................................2311.0015.00---------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGAA................................................2411.0043.00----------------------------------------------------------1.00-------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAAT.................................................2311.0015.00----1.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAT..................................................2111.002.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................CGGTCCTGACGCTTCTCTCCCGCAGAA................................................271.000.00-----------------------------------1.00------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TCGCGCGGTACCTCCAGAGCAACATGATGG........3011.001.00-------------------------------------------------------------1.00----------------------------------------------------------------------------------------------
.AACCCCGCCGGCCGCCGCGCC..............................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------------------------------1.00---------------------------------------
.................................................................................................................................................CGCGGTACCTCCAGAGC..................1711.001.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................GCTCCGGGGCCGGCGCCGGTCCTGAC.................................................................2611.001.00-------------------------------------------------1.00----------------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAGG.................................................2111.002.00-------------------------------------------------------------------------1.00----------------------------------------------------------------------------------
...........................................................................CCCGGCGGGGAGGGGCTCC......................................................................................1911.001.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAG..................................................2111.001.00-----------------------1.00------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATTT................................................2411.0015.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................GGGGCTCCGGGGCCGCCGG...........................................................................191.000.00------------------------------------------------------------------------------------------------------------------------------------------1.00-----------------
.........................CCCAACAGCATCCGC............................................................................................................................................1511.001.00----------------------------------------------------------------------------------------------1.00-------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCCG..................................................2211.009.00---------------------------------------------------------------------------------------------------------------------------1.00--------------------------------
.........................................................................GGCCCGGCGGGGAGGG...........................................................................................1650.600.60--0.20------------------------------0.20--------------------------------------------------------------------------------------------------------------------0.20-----
................................................................AGGCAGGCGGGCCCGG....................................................................................................1620.500.50----------------------------------------------------------------------------------------------------------------------------------------------------0.50-------
................................................................................................GGCCGGCGCCGGTC......................................................................1420.500.50-----------0.50------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CGCGGTACCTCCAGA....................1520.500.50---0.50--------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................CGCGGGCAGGCAGGC............................................................................................................1570.140.14-------------------------------------------------------------------------------------------------------------------------------------------------------0.14----
...........................................................CGGGCAGGCAGGCGGGC........................................................................................................17100.100.10-------------------------------------------------------------0.10----------------------------------------------------------------------------------------------

Antisense strand
CAACCCCGCCGGCCGCCGCGCCAACCCCAACAGCATCCGCGTCAAGATCGGTCAGCCCGCGGGCAGGCAGGCGGGCCCGGCGGGGAGGGGCTCCGGGGCCGGCGCCGGTCCTGACGCTTCTCTCCCGCAGCTGACTTCGGCTTCGCGCGGTACCTCCAGAGCAACATGATGGCGGCCACA
.....................................................................((....))..((((((((..((..((((((((....))))))))..))..))).)))))....................................................
...................................................................68............................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029131(GSM416760)
MCF7. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189786SRR040032(GSM532917)
G603N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR189783GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
....CCCGCCGGCCGCCGCG................................................................................................................................................................ 1694.114.11---2.67-------1.33---0.11--------------------------------------------------------------------------------------------------------------------------------------------
.............................................GATCGGTCAGCCCG......................................................................................................................... 1413.003.00-------------------------------3.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................GGCGGGCCCGGCGGGCCCC............................................................................................ 192.000.00---2.00--------------------------------------------------------------------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCTGA.............................................................................................................................................................. 181.000.00-----------1.00------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................GGCAGGCGGGCCCGGCGGGG............................................................................................... 2011.001.00---------------------------------------------------------------------------------------------------1.00--------------------------------------------------------
....CCCGCCGGCCGCCGCGCGG............................................................................................................................................................. 190.440.00---0.11------------------------------0.22----------------------------------------------------------------------------------------------------------------------0.11--
...CCCCGCCGGCCGCCGCG................................................................................................................................................................ 1770.430.43---0.14-------0.29------------------------------------------------------------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCGTG.............................................................................................................................................................. 180.330.00-----------0.33------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................GCGGTACCTCCAGA.................... 1430.330.33-----------------------------------------------------------------------------------------------------------------------------------------------------0.33------
....CCCGCCGGCCGCCGCGCGGG............................................................................................................................................................ 200.220.00--0.11-------------------------------------------------------------------------------------------------------------------------------------------------------0.11-
....CCCGCCGGCCGCCGCGT............................................................................................................................................................... 170.220.00----------------0.11------------------------------------------0.11------------------------------------------------------------------------------------------------
............CCGCCGCGCCAAC........................................................................................................................................................... 1360.170.17---------------------------------0.17--------------------------------------------------------------------------------------------------------------------------
.................................................................................................GCCGGCGCCGGTC...................................................................... 1390.110.11------------------------------------------------------------0.11-----------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCGCGGT............................................................................................................................................................ 200.110.00-----------------------------------------------------------------------------------------------------------------------------------------------------------0.11
....CCCGCCGGCCGCCGCGAGC............................................................................................................................................................. 190.110.00--------------------------------------------------------------------------------------------------------------------------------------------------------0.11---