ID: uc001rup.10
GENE: PRPF40B(10)
chr12:50028189-50028370+


(1)
BRAIN
(1)
BREAST
(2)
CELL-LINE
(2)
HEART
(2)
LIVER
(2)
OTHER
(6)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GCAACCGGGAGAAGGCAAAGCAGGCATTCAAGGAACTGCTGAGGGACAAGGTGCTGGAGTGGGGCTCCCAGGGAAGGTTTGGAGGGGGCTGGAGCGGGGCAGGCCCCATGACTCCCACCTGCTTCATTCCAGGCTGTCCCCTCCAATGCCTCATGGGAACAGGCCATGAAGATGGTGGTCAC
..........................................((.((...)).))...((..(((((((..............)))))))...)).......................................................................................
........................................41.......................................................98...................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
..........................TTCAAGGAACTGCTGAGGGACAAGGC..................................................................................................................................262.000.002.00-----------------
..................................................................CCCAGGGAAGGTTTGATG..................................................................................................182.000.00-2.00----------------
...................................................................................GGGGGCTGGAGCGGGC...................................................................................161.000.00---------1.00--------
.................................AACTGCTGAGGGACAAGGTGCT...............................................................................................................................2211.001.00----------1.00-------
...............................................................................TGGAGGGGGCTGGAGCGTGGG..................................................................................211.000.00--------------1.00---
.............................AAGGAACTGCTGAGGGACAAGGCTGT...............................................................................................................................261.000.00-------1.00----------
...............................................AAGGTGCTGGAGTGGACGC....................................................................................................................191.000.00------------1.00-----
..................................................................CCCAGGGAAGGTTTGGAGGGGGCTGGAGCGG.....................................................................................3111.001.00----1.00-------------
............................................GACAAGGTGCTGGAGCTGT.......................................................................................................................191.000.00-----------1.00------
.....................................................................AGGGAAGGTTTGGAGGGGCAAG...........................................................................................221.000.00--1.00---------------
...............................................................................................................CTCCCACCTGCTTCATTCCA...................................................2011.001.00------1.00-----------
...............................................................................................................CTCCCACCTGCTTCATTCCAGT.................................................221.000.00--------1.00---------
..............................AGGAACTGCTGAGGGACAAGGC..................................................................................................................................221.000.00-------------1.00----
.............................AAGGAACTGCTGAGGGA........................................................................................................................................1730.670.67---------------0.67--
....CCGGGAGAAGGCAAAG..................................................................................................................................................................1620.500.50----------------0.50-
..............................AGGAACTGCTGAGGGA........................................................................................................................................1660.330.33---0.17-------------0.17

Antisense strand
GCAACCGGGAGAAGGCAAAGCAGGCATTCAAGGAACTGCTGAGGGACAAGGTGCTGGAGTGGGGCTCCCAGGGAAGGTTTGGAGGGGGCTGGAGCGGGGCAGGCCCCATGACTCCCACCTGCTTCATTCCAGGCTGTCCCCTCCAATGCCTCATGGGAACAGGCCATGAAGATGGTGGTCAC
..........................................((.((...)).))...((..(((((((..............)))))))...)).......................................................................................
........................................41.......................................................98...................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
............................................................................................................TGACTCCCACCTGCTCTTG....................................................... 191.000.00--1.00---------------
....................................TGCTGAGGGACAAGGTGCTGGA............................................................................................................................ 2211.001.00---1.00--------------
........................................................GAGTGGGGCTCCCAGGGAGTGT........................................................................................................ 221.000.00-----1.00------------