ID: uc001qds.7
GENE: ST3GAL4(7)
chr11:126278963-126279212+


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(2)
BRAIN 		(10)
BREAST 		(22)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(6)
HELA 		(2)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCTTTCCTCCTCTCTTTCCCTGGTCCTCTCCTGGTCTCCCATCTGTGGCACAGACTTCACCTCCCTTTCCTCTCACCTTGTGCTCCTGAAGGCCTCTGCCATCGCTTGGACCCCCTCGCCTCGCTGAGGACCACTGGGTTGGATTTGAGAAACAGGGCTTCACCCGCTTCTGTCTCTCTCTTCTGACCCCATCCTCCTAGGTGCGAAAGGGTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCC
.......................................................................................................................................((((..((...((((.(((((((.......))).)))).))))...))..)))).............................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782GSM339996(GSM339996)
hues6Neuron. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038856(GSM458539)
D11. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		SRR343334GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR038858(GSM458541)
MEL202. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR189783SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR189785SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................TGGGTTGGATTTGAGAAACAGG..............................................................................................22137.0037.0018.007.001.00-1.00---2.002.00---------1.00-----1.00---1.00-----------------1.00-----------1.00---------1.00--
....................................................................................................................................ACTGGGTTGGATTTGAGAAAC.................................................................................................21128.0028.0022.001.00--1.00--2.00-------1.00---------------------------1.00----------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACAGG..............................................................................................23123.0023.002.00--10.003.00---1.00-2.00----------1.001.00----1.00-------1.00-----------------------------1.00------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAG...............................................................................................23119.0019.0011.002.00--1.00----1.001.00-1.00-----------------1.00-----------------------------1.00-----------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAGG..............................................................................................24115.0015.007.001.00--1.00-------1.00---2.00-------2.00--------------1.00--------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAG...............................................................................................21112.0012.002.003.002.00-1.00--1.00-----1.00-------1.00---------1.00----------------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACA................................................................................................22111.0011.004.00-2.00----------1.002.00-----------------------1.00----------------1.00----------------
..........................................................................................................................................................................TGTCTCTCTCTTCTGACCCCAT..........................................................2217.007.00------6.00--------------------------------------------1.00--------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACAG...............................................................................................2215.005.001.001.00-----2.00------------------------1.00---------------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAA..................................................................................................2015.005.002.00----------------------1.00------------------1.00-----------------------1.00-----
......................................................................................................................................TGGGTTGGATTTGAGAAACAGGA.............................................................................................2315.0037.00--3.00-1.00------------------------------------1.00------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGA....................................................................................................1814.004.003.00---------------------------------------------------1.00-------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACAGGT.............................................................................................2413.0023.00-------------------1.00-------------------------1.00--1.00-----------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAA...............................................................................................2313.0011.003.00-----------------------------------------------------------------------
...................................................................................................................................................................................CTTCTGACCCCATCCTCCACCG.................................................222.000.00----------------------------1.00--------------------------------1.00----------
............................................................................................................................TGAGGACCACTGGGTTGGATTT........................................................................................................2212.002.00-----2.00------------------------------------------------------------------
............................................................................................................................TGAGGACCACTGGGTTGGATTTGAG.....................................................................................................2512.002.00-----------2.00------------------------------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACA................................................................................................2112.002.00-----------------2.00------------------------------------------------------
............................................................................................................................TGAGGACCACTGGGTTGGATTTGAGAAACAG...............................................................................................3111.001.00----------------------------------------1.00-------------------------------
..................................................................................................................................................................................................TCCTAGGTGCGAAAGA........................................161.000.00--------------------------------------------------1.00---------------------
............................................................................................................................TGAGGACCACTGGGTTGGATTTGAGAAAC.................................................................................................2911.001.00-----1.00------------------------------------------------------------------
................................................................................................................CCCTCGCCTCGCTGAGGACCACTGGGTTGGATTTGAGAAACAGGGCTTCACCCGCTTCTGTCTCTCTCTTCTGACCCCATCCTCCTAGA.................................................891.000.00---------------------------------------------------------1.00--------------
.......................................................................................................................................GGGTTGGATTTGAGAAACAGGGCTTCA........................................................................................2711.001.00--1.00---------------------------------------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAACCAG...............................................................................................221.000.00--------------------------------------------1.00---------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAG..................................................................................................191.000.00--1.00---------------------------------------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAGGT.............................................................................................2311.0037.001.00-----------------------------------------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAGGAA............................................................................................2411.0037.00----------------------------------1.00-------------------------------------
......................................................................................................................................................................................................................CTGGAAACAGCCTCCCCTC.................1911.001.00---------------------------------1.00--------------------------------------
.......................................................................................................................................................................................................................TGGAAACAGCCTCCCCTCTCCG.............221.000.00-----------1.00------------------------------------------------------------
............................................................................CTTGTGCTCCTGAAGGG.............................................................................................................................................................171.000.00-----------------------1.00------------------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAACAGA..............................................................................................2311.005.00---------------------------------------------------------------1.00--------
..................................................................................................................................................................................TCTTCTGACCCCATCCTCCTAGAA................................................2411.001.00----------------------1.00-------------------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAA..................................................................................................1911.001.00-------------1.00----------------------------------------------------------
.............................................................................................................................GAGGACCACTGGGTTGGATTTGAGAAAC.................................................................................................2811.001.00-----1.00------------------------------------------------------------------
..............................CTGGTCTCCCATCTGAAC..........................................................................................................................................................................................................181.000.00-------------------------------------1.00----------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAGGGCTTCACC......................................................................................3211.001.00--1.00---------------------------------------------------------------------
............................................................................................................................................................................TCTCTCTCTTCTGACCCCATCCTCC.....................................................2511.001.00----------------------------------------------------------1.00-------------
......................................................................................................................................TGGGTTGGATTTGAGAAAC.................................................................................................1911.001.001.00-----------------------------------------------------------------------
.....................................................................................................................................CTGGGTTGGATTTGAGAAAC.................................................................................................2011.001.001.00-----------------------------------------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAGCAG...............................................................................................211.000.00--------------------------------------------------------1.00---------------
............................................................................................................GACCCCCTCGCCTCGGCGG...........................................................................................................................191.000.00----------------------------------------------1.00-------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAAGA................................................................................................201.000.00------------1.00-----------------------------------------------------------
..................................................................................................................................................................................TCTTCTGACCCCATCCTCCTAG..................................................2211.001.00------------------------------------1.00-----------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAA...................................................................................................1911.001.001.00-----------------------------------------------------------------------
.......................................................................................................................................GGGTTGGATTTGAGAAACAGGGTT...........................................................................................241.000.00-------------------------------------------------------------------1.00----
..........................................................................................................................................TTGGATTTGAGAAACAGGGCTTCA........................................................................................2411.001.001.00-----------------------------------------------------------------------
.......................................................................................................................................................................................................GGTGCGAAAGGGTTTCTGGAAACAGCC........................2711.001.00--------------------------1.00---------------------------------------------
............................................................................................................................TGAGGACCACTGGGTTGGATTTGAGAAACAGGG.............................................................................................3311.001.00---------------1.00--------------------------------------------------------
......................................................................................................................................TGGGTTGGATTTGAGAAACAGA..............................................................................................2211.0012.00---------1.00--------------------------------------------------------------
.......................................................................................................................................GGGTTGGATTTGAGAAACAGG..............................................................................................2111.001.00--1.00---------------------------------------------------------------------
..................................................................................................................................................................................TCTTCTGACCCCATCCTCCTAGGTGCA.............................................271.000.00------------------------------------------------------1.00-----------------
............................................................................................................................................GGATTTGAGAAACAGGGCTT..........................................................................................2011.001.00--------------------------------------------------------------------1.00---
..................................................................................................................................................................................TCTTCTGACCCCATCCTCCTAGA.................................................2311.001.00-------------------------------------------------1.00----------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAGT..............................................................................................2411.0019.00--------1.00---------------------------------------------------------------
.................................................................................................................................................................................................................GGTTTCTGGAAACAGCCTCCCC...................2211.001.00--------------------1.00---------------------------------------------------
....................................................................................................................................ACTGGGTTGGATTTGAGAAACAGGC.............................................................................................2511.0015.00--------------------------------------------------------------1.00---------
............................................................................................................................TGAGGACCACTGGGTTGGGTTT........................................................................................................221.000.00-----1.00------------------------------------------------------------------

Antisense strand
CCTTTCCTCCTCTCTTTCCCTGGTCCTCTCCTGGTCTCCCATCTGTGGCACAGACTTCACCTCCCTTTCCTCTCACCTTGTGCTCCTGAAGGCCTCTGCCATCGCTTGGACCCCCTCGCCTCGCTGAGGACCACTGGGTTGGATTTGAGAAACAGGGCTTCACCCGCTTCTGTCTCTCTCTTCTGACCCCATCCTCCTAGGTGCGAAAGGGTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCC
.......................................................................................................................................((((..((...((((.(((((((.......))).)))).))))...))..)))).............................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782GSM339996(GSM339996)
hues6Neuron. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038856(GSM458539)
D11. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		SRR343334GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR038858(GSM458541)
MEL202. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR189783SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR189785SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................................................................TCTCTCTTCTGACCCCATCCTCCTAGG................................................. 2711.001.00-----------------------------------------------------1.00------------------
......................................................................................................................................................AACAGGGCTTCACCCGCGCT................................................................................ 201.000.00----------------------------------------------------------------1.00-------
...........................................................CCTCCCTTTCCTCTCACC............................................................................................................................................................................. 1811.001.00------------------1.00-----------------------------------------------------
.............................................................................................................................................................CTTCACCCGCTTCTGATGT.......................................................................... 191.000.00-----1.00------------------------------------------------------------------
.....CCTCCTCTCTTTCCCTGGGTG................................................................................................................................................................................................................................ 211.000.00--1.00---------------------------------------------------------------------
.............................................................................................................................................................................................................................CAGCCTCCCCTCATCTGCT.......... 191.000.00--------------------1.00---------------------------------------------------
..................................................................................................CCATCGCTTGGACCCCTCCT.................................................................................................................................... 201.000.00------------------1.00-----------------------------------------------------
...............................................................................................................................................................................................................................GCCTCCCCTCATCTGG........... 1630.330.33----------------------------------------------------------------------0.33-
.......................................................................................................................................................................................................................................TCATCTGGGATGTCA.... 1570.140.14-----------------------------------------------------------------------0.14