ID: uc001obx.23
GENE: ATG2A(23)
chr11:64675087-64675269-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(19)
CELL-LINE 		(2)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
GTCCACATCTTTCTGCCCAGCAAGGAGGTCTACGAGAGCATCTACAACAGGTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAGGATCAACAACGACCTGCTCATGTGGGAGCCTGCAGATCTGCTTCCCACCC
......................................................................(((((((..((((((..(((((((........)))..))))..))))))))))))).........................................................
...............................................................64...................................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577588(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
....................................................................CAGGGCGGGACTGGACACTGG..............................................................................................21128.0028.00-5.0012.003.003.00-1.001.00-1.00---------1.00--------------------1.00---
....................................................................CAGGGCGGGACTGGACACTGGGT............................................................................................23126.0026.0013.002.001.00-1.001.001.00--1.00--1.001.00--------1.00---1.00---1.001.00------------
.....................................................................AGGGCGGGACTGGACACTGGGTGG..........................................................................................2419.009.003.00--1.00-2.00--1.001.00-----------------------------1.00----
....................................................................CAGGGCGGGACTGGACACT................................................................................................1918.008.00-4.003.00----------1.00------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGT............................................................................................2218.008.001.002.00---3.001.00-----------------------------1.00-------
.....................................................................AGGGCGGGACTGGACACTGG..............................................................................................2015.005.00-------1.00--------1.001.00---1.00----------------1.00-----
....................................................................CAGGGCGGGACTGGACACTGGA.............................................................................................2215.0028.00-2.00---1.00-----------1.001.00-------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGT..........................................................................................244.000.00----2.00---------------1.00------------1.00----------
....................................................................CAGGGCGGGACTGGACACTGGG.............................................................................................2214.004.00---3.00------------1.00---------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTA...........................................................................................2313.008.003.00-------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGAA............................................................................................2313.0028.003.00-------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTGGA.........................................................................................263.000.00----3.00---------------------------------------
....................................................................CAGGGCGGGACTGGACACTGT..............................................................................................2113.001.00-1.00------1.00--------------------1.00--------------
..................................................GTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAG..................................................8313.003.00----------3.00---------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTTT..........................................................................................2513.0026.001.00--2.00----------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGATC...........................................................................................2413.0028.00-----------3.00--------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTGTA.........................................................................................262.000.00----2.00---------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGG.............................................................................................2112.002.00--2.00-----------------------------------------
.....................................................................AGGGCGGGACTGGACACTGT..............................................................................................202.000.00-2.00------------------------------------------
...................................................................GCAGGGCGGGACTGGACACTGT..............................................................................................222.000.00---2.00----------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGA............................................................................................2312.004.00--1.00---------------------1.00-------------------
...................................................................GCAGGGCGGGACTGGACACTGGG.............................................................................................2312.002.002.00-------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGT.............................................................................................2212.0028.00-2.00------------------------------------------
.............................................................................................................CTGCTGTCCACCCGCCTATCT.....................................................2112.002.00--------------1.00-------------------1.00---------
.....................................................................AGGGCGGGACTGGACACTGGGTGGA.........................................................................................2512.009.001.00--------------------------1.00----------------
.......................................................................................................................................................CATGTGGGAGCCTGCAGAT.............1911.001.00-------------------------1.00------------------
......................AGGAGGTCTACGAGAGCATCTACA.........................................................................................................................................2411.001.00------------------------------------------1.00-
.....................................................................AGGGCGGGACTGGACACTGGGG............................................................................................2211.002.00--1.00-----------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTAGA.........................................................................................2511.008.00-----1.00--------------------------------------
.....................................................................AGGGCGGGACTGGACACTAGGT............................................................................................221.000.00-----1.00--------------------------------------
....................................................................CAGGGCGGGACTGGACACTGTTT............................................................................................2311.001.00---1.00----------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGTTT........................................................................................261.000.00------------1.00-------------------------------
...........................................................................................................ACCTGCTGTCCACCCGCCTATC......................................................2211.001.001.00-------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGAA...........................................................................................2411.004.001.00-------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGGCA..........................................................................................2511.004.00-----------------------1.00--------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGA..........................................................................................241.000.00-----------------------------------------1.00--
....................................................................CAGGGCGGGACTGGACACTGAAA............................................................................................2311.001.00--------1.00-----------------------------------
....................................................................CAGGGCGGGACTGGACACTGTAA............................................................................................2311.001.00-------1.00------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTTG..........................................................................................2411.008.001.00-------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGATGT..........................................................................................2511.0028.00--------1.00-----------------------------------
...................................................................GCAGGGCGGGACTGGACACTGGT.............................................................................................231.000.00-----------------------------------1.00--------
.............................................................................ACTGGACACTGGGTGCTTG.......................................................................................191.000.00--------------------------------1.00-----------
.............................................................................................................CTGCTGTCCACCCGCCTATCTCTT..................................................241.000.00----------------------------1.00---------------
....................................................................CAGGGCGGGACTGGACACTG...............................................................................................2011.001.00-------1.00------------------------------------
...........................................................................................................ACCTGCTGTCCACCCGCCTATCT.....................................................2311.001.00-------------------------------------1.00------
..................................................................AGCAGGGCGGGACTGGACACTGA..............................................................................................231.000.00------1.00-------------------------------------
...........................................................................................................................................CAACGACCTGCTCATGTGGGAGCCTGCAGA..............3011.001.00------1.00-------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTGGTTT.......................................................................................281.000.00-----1.00--------------------------------------
.....................................................................AGGGCGGGACTGGACACCGGA.............................................................................................2121.000.50-------1.00------------------------------------
..............................................................................................................................................................GAGCCTGCAGATCTGCTTCCCA...2211.001.00---------------1.00----------------------------
.....................................................................AGGGCGGGACTGGACAC.................................................................................................1720.500.50---------0.50----------------------------------
.....................AAGGAGGTCTACG.....................................................................................................................................................1370.140.14-------------------------------------------0.14

Antisense strand
GTCCACATCTTTCTGCCCAGCAAGGAGGTCTACGAGAGCATCTACAACAGGTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAGGATCAACAACGACCTGCTCATGTGGGAGCCTGCAGATCTGCTTCCCACCC
......................................................................(((((((..((((((..(((((((........)))..))))..))))))))))))).........................................................
...............................................................64...................................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577588(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
......................................................................................................................................................................AGATCTGCTTCCCACCAA 181.000.00---------------1.00----------------------------
.........................................................CCCGGGGCCAGCAGGGCGTC.......................................................................................................... 201.000.00--------------1.00-----------------------------