ID: uc001nzb.2
GENE: PLCB3(2)
chr11:64022239-64022419+


(1)
AGO1.ip 		(1)
AGO2.ip 		(2)
BRAIN 		(6)
BREAST 		(21)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(1)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCAGTTCCATCAGGGACACACGGACAGGCCGGTACGCCCGCCTGCCCAAGGTGAGTGATGAGCCTGGGAGTGAAGACCACAGCGAGGCTGTGCGGGAGCCCCCTCTTCACCCTTCGCTGTCACCTACTCAGGACCCCAAGATCCGGGAAGTTCTGGGCTTTGGGGGTCCCGATGCCCGGCT
..................................................(((.(((((.(((..(((.((((((..((((((...)))))).(((....))).)))))))))..)))))))).)))......................................................
..................................................51..............................................................................131................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189786SRR189783SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189785SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR037938(GSM510476)
293Red. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................ACCCTTCGCTGTCACCTACTCA...................................................22140.0040.0032.00---------1.002.00-2.00---1.00----------------1.00---------1.00--------------
............................................................................................................ACCCTTCGCTGTCACCTACTCT...................................................22118.005.0015.00-------------2.00-------------------------------------1.00------
..................................................GTGAGTGATGAGCCTGGGAGTGA............................................................................................................23115.0015.00--1.004.00---2.00----3.00--2.001.00-----1.00----------------1.00-------------------
...................................................TGAGTGATGAGCCTGGGAGTGAAGACCACAGCGAGGCTGTGCGGGAGCCCCCTCTTCACCCTTCGCTGT.............................................................69111.0011.00-11.00---------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAG...............................................................................................................20110.0010.002.00---1.002.003.00-----------1.00-----------------1.00----------------------
..................................................GTGAGTGATGAGCCTGGGAGT..............................................................................................................2116.006.00--1.00--2.00---1.00--------1.00---------------------------1.00------------
............................................................................................................ACCCTTCGCTGTCACCTACTCAG..................................................2316.006.005.00-----------------------1.00----------------------------------
............................................................................................................ACCCTTCGCTGTCACCTACTC....................................................2115.005.003.00------------1.00--1.00------------------------------------------
............................................................................................................ACCCTTCGCTGTCACCTACT.....................................................2015.005.001.00-1.00--1.00----------------------1.00--------------1.00---------------
...................................................TGAGTGATGAGCCTGGGAG...............................................................................................................1914.004.00--3.00-1.00------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAA...........................................................................................................2413.003.00---2.00-------------------1.00-----------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGACCACAGCGAGGCTGTGCGGGAGCCCCCTCTTCACCCTTCGCTGTCACCTACTCAG..................................................8113.003.00-3.00---------------------------------------------------------
............................................................................................................ACCCTTCGCTGTCACCTACTCC...................................................2213.005.002.00----------1.00-----------------------------------------------
...................................................TGAGTGATGAGCCTGGGAGT..............................................................................................................2013.003.00--1.00----1.00----------------------------------------------1.00----
..................................................GTGAGTGATGAGCCTGGGAGA..............................................................................................................2113.0010.00--2.00------1.00-------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAT...........................................................................................................2412.0015.00----1.00---------------------1.00--------------------------------
..................................................GTGAGTGATGAGCCTGGGAAG..............................................................................................................2112.002.00--------2.00--------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGAC........................................................................................................2712.002.00------------------------------1.00-------1.00--------------------
...................................................TGAGTGATGAGCCTGGGAGTGTAA..........................................................................................................2412.001.00------2.00----------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGA................................................................................................................1912.002.00--1.00--1.00-----------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGA.........................................................................................................2612.002.00----------------------1.00--------------1.00---------------------
...........AGGGACACACGGACAGGC........................................................................................................................................................1812.002.00--1.00----------------------------------------------1.00---------
........ATCAGGGACACACGGACAGGCCGGCACG.................................................................................................................................................282.000.00---------------------2.00-------------------------------------
..................................................GTGAGTGATGAGCCTGAAAC...............................................................................................................202.000.00--------2.00--------------------------------------------------
.........TCAGGGACACACGGACAGGC........................................................................................................................................................2012.002.00--------------------1.00---------------------------1.00----------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGACC.......................................................................................................2812.002.00---------1.00-----------------------1.00-------------------------
........ATCAGGGACACACGGACAGGCC.......................................................................................................................................................2211.001.00-----------------------------------------1.00-----------------
..................................................GTGAGTGATGAGCCTGGGAGTA.............................................................................................................2211.006.00--------------------1.00--------------------------------------
...................................................TGAGTGATGAGCCTGGGAGTGAAG..........................................................................................................2411.001.00--1.00--------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGACCA......................................................................................................2911.001.00----------------------------------------1.00------------------
.....................................................AGTGATGAGCCTGGGAGTGAAGA.........................................................................................................2311.001.00----1.00------------------------------------------------------
...................................................TGAGTGATGAGCCTGGGAGTG.............................................................................................................2111.001.00----1.00------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGG.................................................................................................................1811.001.00--1.00--------------------------------------------------------
...................................................TGAGTGATGAGCCTGGGAGTGAAGACCAC.....................................................................................................2911.001.00----1.00------------------------------------------------------
............GGGACACACGGACAGGAC.......................................................................................................................................................181.000.00------------------------------------------1.00----------------
.................................................................................................................................................GGAAGTTCTGGGCTTTGGG.................1911.001.00--------------------------------------------------------1.00--
..................................................GTGAGTGATGAGCCTGGGAGTGATAT.........................................................................................................2611.0015.00---1.00-------------------------------------------------------
........ATCAGGGACACACGGACAG..........................................................................................................................................................1911.001.00-------------------1.00---------------------------------------
............GGGACACACGGACAGGC........................................................................................................................................................1711.001.00-------------------1.00---------------------------------------
...............................................................................................GAGCCCCCTCTTCACCCTTTTA................................................................221.000.00--------------------------------------------------1.00--------
..................................................GTGAGTGATGAGCCTGGGAGTG.............................................................................................................2211.001.00-------1.00---------------------------------------------------
..................................................GTGAGTGATGAGCCTGAAA................................................................................................................191.000.00---------------------------1.00-------------------------------
...............................................................CTGGGAGTGAAGACCGAC....................................................................................................181.000.00--------------------------------1.00--------------------------
...................................................TGAGTGATGAGCCTGGGAGTGA............................................................................................................2211.001.00-----------------1.00-----------------------------------------
............................................................................................................ACCCTTCGCTGTCACCACTC.....................................................201.000.00----------1.00------------------------------------------------
..........................................................................................TGCGGGAGCCCCCTCCAA.........................................................................181.000.001.00----------------------------------------------------------
...........AGGGACACACGGACAGG.........................................................................................................................................................1711.001.00-------------------------------------------------------1.00---
............................................................................................................ACCCTTCGCTGTCACCTACCCT...................................................221.000.00----------1.00------------------------------------------------
.........................................................................................................TTCACCCTTCGCTGTCACCTAA......................................................221.000.00---------1.00-------------------------------------------------
.......CATCAGGGACACACGGACAGGCCG......................................................................................................................................................2411.001.00-----------------------------------1.00-----------------------
............GGGACACACGGACAGGCCG......................................................................................................................................................1911.001.00-------------------------1.00---------------------------------
............................................................................................................ACCCTTCGCTGTCACCTACTCAGT.................................................2411.006.00-----------------------------1.00-----------------------------
..................CACGGACAGGCCG......................................................................................................................................................1350.200.20----------------------------------------------------------0.20
..................................................................................................................................................GAAGTTCTGGGCTTTG...................1650.200.20---------------------------------------------------------0.20-

Antisense strand
TCAGTTCCATCAGGGACACACGGACAGGCCGGTACGCCCGCCTGCCCAAGGTGAGTGATGAGCCTGGGAGTGAAGACCACAGCGAGGCTGTGCGGGAGCCCCCTCTTCACCCTTCGCTGTCACCTACTCAGGACCCCAAGATCCGGGAAGTTCTGGGCTTTGGGGGTCCCGATGCCCGGCT
..................................................(((.(((((.(((..(((.((((((..((((((...)))))).(((....))).)))))))))..)))))))).)))......................................................
..................................................51..............................................................................131................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189786SRR189783SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189785SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR037938(GSM510476)
293Red. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........AGGGACACACGGACAAT......................................................................................................................................................... 171.000.00-----------------------------------------------------1.00-----
.........................................................................................................TTCACCCTTCGCTGTCA........................................................... 1711.001.00-------------------------------1.00---------------------------
............................................................................................................................................................GCTTTGGGGGTCCCGATGAGCT... 221.000.00---------------------------------------------1.00-------------
....................................................................................................................................................AGTTCTGGGCTTTGGGCTG.............. 191.000.00-----------------------------------------------1.00-----------