ID: uc001kva.14
GENE: NFKB2(14)
chr10:104159902-104160084+


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(13)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(18)
CELL-LINE 		(2)
CERVIX 		(1)
HELA 		(3)
LIVER 		(3)
OTHER 		(9)
SKIN

Sense strand
ACCACGCCCAGGACCTCGGCGTTGTCAACCTCACCAACCACCTGCACCAGGTGCGGGGGCGCCTACTGGGGAGGTGGGAGGGGTTGGAAGGCAAGTGGGTCTCGGGCCTGGCTCACCCTGCTTTCATCCCCAGACGCCCCTGCACCTGGCGGTGATCACGGGGCAGACGAGTGTGGTGAGCTT
...............................................................................((((...(((((((.(((((((........)))))))..)))))))..))))....................................................
.........................................................................74.........................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR343334SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR343335SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR189784TAX577453(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................AGGGGTTGGAAGGCAAGTGG.....................................................................................20110.0010.00-1.00-----1.00-2.00------------1.00-1.00----1.00--------1.00---------1.00-1.00------
..............................................................................AGGGGTTGGAAGGCAAGTGGGT...................................................................................2218.008.001.00-------1.00---2.00--------1.00---1.00------1.00--1.00---------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGTCT.................................................................................2416.006.001.00--1.00-------1.00--1.00-----------1.00-------1.00----------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGAA...................................................................................2215.0010.003.00---1.00-----------------------------------------1.00----------
..............................................................................AGGGGTTGGAAGGCAAGTGGGAA..................................................................................2315.003.00--------1.00-2.00--2.00-------------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGATC..................................................................................2315.0010.00--5.00------------------------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGTAA.................................................................................2414.008.00-1.00-2.00----------------1.00------------------------------------
..........................AACCTCACCAACCACTATG..........................................................................................................................................193.000.00-----2.00--------------------------------------1.00------------
..............................................................................AGGGGTTGGAAGGCAAGTGGG....................................................................................2113.003.00-------1.00-----------------------------------1.00--------1.00----
..............................................................................AGGGGTTGGAAGGCAAGTGGGTAT.................................................................................2413.008.001.00---1.00------------1.00---------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGTCA.................................................................................2413.001.002.00-----------------1.00--------------------------------------
...............................................................................................................CTCACCCTGCTTTCATCCCCAGT.................................................233.000.00------------------------------------1.00--1.00---------1.00-------
........................................................................................AGGCAAGTGGGTCTCGGG.............................................................................1812.002.00-2.00-------------------------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGAA....................................................................................212.000.00----------------2.00----------------------------------------
..............................................................................................................................................................CGGGGCAGACGAGTGTGGTGAGCT.2411.001.00-----------1.00---------------------------------------------
...................................................................................................................................................................CAGACGAGTGTGGTGAGCT.1911.001.00---------------1.00-----------------------------------------
...............................................................................................................................................ACCTGGCGGTGATCACGG......................1811.001.00---------------1.00-----------------------------------------
.............................................................................GAGGGGTTGGAAGGCTGA........................................................................................181.000.00------------------------------------------1.00--------------
................................................................................................................................................CCTGGCGGTGATCACGGGGCAGACGAGTGTGGTGA....3511.001.00-------------------1.00-------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGAAA.................................................................................2411.003.00----------------------------------------1.00----------------
..................................................................................GTTGGAAGGCAAGTGGGTCTCGG..............................................................................2311.001.00-------------------------------------1.00-------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGAT...................................................................................2211.0010.001.00--------------------------------------------------------
................................................................................................................TCACCCTGCTTTCATCATG....................................................191.000.00-----------------------------------------------1.00---------
............................................................................................................................................................CACGGGGCAGACGAGTGTGGTGA....2311.001.00-------------------------------1.00-------------------------
.............................................................................................................................................................ACGGGGCAGACGAGTGTGGTGA....2211.001.00-----------------------------------------------------1.00---
...........................................................................................................................................................TCACGGGGCAGACGAGTGTGGTGAGCC.271.000.00---------------------------------------------1.00-----------
.............CCTCGGCGTTGTCAACCTCACCAA..................................................................................................................................................2411.001.00-----------------------------------------1.00---------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGTTTA................................................................................2511.008.00--------------1.00------------------------------------------
.........AGGACCTCGGCGTTGTCAACCT........................................................................................................................................................2211.001.00---------------------------------------------------1.00-----
...........................................................................................CAAGTGGGTCTCGGGCC...........................................................................1711.001.00-----------------------1.00---------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGTC..................................................................................2311.001.00-----------------1.00---------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGTA..................................................................................2311.008.00------1.00--------------------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGTT..................................................................................2311.008.00-1.00-------------------------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTTGAA...................................................................................221.000.00----1.00----------------------------------------------------
..............................................................................AGGGGTTGGAAGGCAAGTGGGTCTT................................................................................2511.006.00------1.00--------------------------------------------------
...............................................................................................................................................................GGGGCAGACGAGTGTGGG......181.000.00------------------------------1.00--------------------------
........................................................................................AGGCAAGTGGGTCTCGGGCCTG.........................................................................2211.001.00---------------------------1.00-----------------------------
...................................................................................................................................................................CAGACGAGTGTGGTGA....1611.001.00----------------------------1.00----------------------------
.............................CTCACCAACCACCTGCA.........................................................................................................................................1740.250.25------------------0.25--------------------------------------
.......CCAGGACCTCGGCG..................................................................................................................................................................1470.140.14-------------------------------------------------------0.14-
...................................AACCACCTGCACCAG.....................................................................................................................................1580.120.12--------------------------------------------------------0.12

Antisense strand
ACCACGCCCAGGACCTCGGCGTTGTCAACCTCACCAACCACCTGCACCAGGTGCGGGGGCGCCTACTGGGGAGGTGGGAGGGGTTGGAAGGCAAGTGGGTCTCGGGCCTGGCTCACCCTGCTTTCATCCCCAGACGCCCCTGCACCTGGCGGTGATCACGGGGCAGACGAGTGTGGTGAGCTT
...............................................................................((((...(((((((.(((((((........)))))))..)))))))..))))....................................................
.........................................................................74.........................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR343334SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR343335SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR189784TAX577453(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................GCTTTCATCCCCAGACTGT............................................. 191.000.00---------------------------------1.00-----------------------
...................................AACCACCTGCACCAGGT................................................................................................................................... 1720.500.50------------------------------------------------------0.50--