ID: uc001dxa.16
GENE: CELSR2(16)
chr1:109811003-109811252+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(19)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(2)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGGAGGAGGGCTTAGGGGCAGAGCATCCAGTGACCTGAGTGGGCAGTGCGGTCCAGGAGCATTTCAGGGGAGGCAACAGTGAGCACAGAGGGAGGGGCCTGGTGGGGAGCAGGGACTGGCCCGGGCACAGGCCGGGGCTCCATGGTGGGGATGTCAGGTGTGGGTTGTGAGCACACCCACCGTGACCTTGCCCACCCCAGAATCTGCTGCGGGTGGGCAGCGCCCTCCTGGACACAGCCAACAAGCGGCA
...............................................................................................................................................((((((((.((((((((.((..((....))..)))))).)))).)).))))))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189786SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189782SRR189787SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGG.......................................................................................22174.0074.0034.0015.003.004.00-3.005.001.001.001.00--1.00--------1.00-1.00-1.00-----1.00-----1.00---------------1.00-
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGG.......................................................................................23132.0032.004.001.002.003.00-2.00---3.003.003.002.00-3.00---2.00-----1.00--------1.00-----1.00---1.00-----------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGA.......................................................................................2210.000.00-3.001.00-3.00--1.00---------1.00---1.00---------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGG.......................................................................................2119.009.005.00-1.002.00--------1.00------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGGGG.......................................................................................227.000.005.001.001.00----------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGG......................................................................................2417.007.007.00------------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGA......................................................................................2316.0074.003.00--2.00-1.00-------------------------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGG......................................................................................2215.005.00---1.00---------------1.00----------------------1.00----1.00--1.00----
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGA......................................................................................2414.0032.00----2.00-----------1.00---------------------------1.00----------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGTAAT..................................................................................2613.002.00-------------3.00-----------------------------------------
..................................................................................................................................................................................ACCGTGACCTTGCCCACCCCAG..................................................2213.003.00---------------3.00---------------------------------------
...............................................................................................................................................GGTGGGGATGTCAGGTGTGG.......................................................................................2013.003.00----3.00--------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGT......................................................................................2413.0032.002.00---------------------------1.00--------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTAAAA.......................................................................................212.000.00----2.00--------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGTTAG....................................................................................252.000.00----2.00--------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGAA.....................................................................................2412.0074.00--2.00----------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGG......................................................................................2312.002.00----------------------1.00-----------1.00--------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGT.....................................................................................2312.002.00-----------------1.00------------------1.00------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTTG.......................................................................................2211.001.00-1.00-----------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGT.......................................................................................221.000.00-----------------------------------------1.00-------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGGGG.......................................................................................211.000.00-----1.00-------------------------------------------------
......................................GTGGGCAGTGCGGTCGATA.................................................................................................................................................................................................191.000.00----------------------------------------------------1.00--
....................................................................................................................................................GGATGTCAGGTGTGGGTTG...................................................................................1911.001.00----------1.00--------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGAT..........................................................................................201.000.00-------1.00-----------------------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGCT....................................................................................2411.005.00----------------1.00--------------------------------------
......................................GTGGGCAGTGCGGTCAGT..................................................................................................................................................................................................181.000.00------------------------1.00------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGA.......................................................................................211.000.00--1.00----------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGCGG.......................................................................................231.000.00--------1.00----------------------------------------------
.................................................................................................................................................................................CACCGTGACCTTGCCCACCCCA...................................................2211.001.00-------1.00-----------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAG.............................................................................................1721.001.00---------------------------------------------1.00---------
..............................................................................................................................................TGGTGGGGATGTCAGGTATT........................................................................................201.000.00--------------------1.00----------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGT.........................................................................................2111.001.00-----------------------------1.00-------------------------
.......................CATCCAGTGACCTGAGTGGGCAGTGCGG.......................................................................................................................................................................................................2811.001.00------------------------------1.00------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGTTTT...................................................................................2611.0074.00-------------------------1.00-----------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGCGG.......................................................................................221.000.00--------1.00----------------------------------------------
....................................................................................................................................................................................................................................TGGACACAGCCAACAAGCGGCA2211.001.00--------------------1.00----------------------------------
.............................................................................................................................................................................CACCCACCGTGACCTTGCCCATA......................................................231.000.00---------------------------1.00---------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTG........................................................................................2211.001.00-------------------1.00-----------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGT.......................................................................................2311.001.00----------------------1.00--------------------------------
...................................................................................................................................................................................................................................CTGGACACAGCCAACAAGCAGCA231.000.00---------------------------------------------------1.00---
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGAA......................................................................................2411.001.00----------------------------------------1.00--------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGT.........................................................................................2011.001.00------------------------------------------------1.00------
............................................................................................................................................CATGGTGGGGATGTCAGGTGCGGG......................................................................................241.000.00--------1.00----------------------------------------------
.................................................................................................................................................................................CACCGTGACCTTGCCCACCCCAG..................................................2311.001.00----------------------------------------------1.00--------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTAGT......................................................................................2411.001.00-----------------------1.00-------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGA.......................................................................................2311.001.00-----1.00-------------------------------------------------
........................................................................................................................................................................................................AATCTGCTGCGGGTGG..................................1611.001.00--------------------------------1.00----------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGCAAT...................................................................................2611.0074.00--1.00----------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGAT......................................................................................2411.001.00-------------------------------------------------1.00-----
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGTG.....................................................................................2511.0032.00--------1.00----------------------------------------------
.................................................................................................CCTGGTGGGGAGCAGGGACTGGC..................................................................................................................................2311.001.00------------------------------------------------------1.00
............................................................................................................................................CATGGTGGGGATGTCAGGTATGG.......................................................................................231.000.00-----------------------------------1.00-------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGTCG.....................................................................................241.000.00--------------------------1.00----------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGAT.....................................................................................2411.0074.00-----------1.00-------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGTTTT.........................................................................................2120.501.00-------0.50-----------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGG............................................................................................1720.500.50--------------------------0.50----------------------------
..............................................................................................................................ACAGGCCGGGGCTC..............................................................................................................1490.440.44----------------0.33----------0.11---------------------------

Antisense strand
AGGAGGAGGGCTTAGGGGCAGAGCATCCAGTGACCTGAGTGGGCAGTGCGGTCCAGGAGCATTTCAGGGGAGGCAACAGTGAGCACAGAGGGAGGGGCCTGGTGGGGAGCAGGGACTGGCCCGGGCACAGGCCGGGGCTCCATGGTGGGGATGTCAGGTGTGGGTTGTGAGCACACCCACCGTGACCTTGCCCACCCCAGAATCTGCTGCGGGTGGGCAGCGCCCTCCTGGACACAGCCAACAAGCGGCA
...............................................................................................................................................((((((((.((((((((.((..((....))..)))))).)))).)).))))))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189786SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189782SRR189787SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................................................................AATCTGCTGCGGGTGGCC................................ 181.000.00------1.00------------------------------------------------
...............................................................................................GGCCTGGTGGGGAGCACCA........................................................................................................................................ 191.000.00-------1.00-----------------------------------------------
..............................................................................GTGAGCACAGAGGGAGCTC......................................................................................................................................................... 191.000.00--------------------------------------1.00----------------