ID: uc001dbo.20
GENE: CACHD1(20)
chr1:65142378-65142627+


(1)
B-CELL 		(9)
BRAIN 		(13)
BREAST 		(13)
CELL-LINE 		(8)
CERVIX 		(1)
KIDNEY 		(7)
LIVER 		(2)
OTHER 		(15)
SKIN 		(4)
UTERUS

Sense strand
GTTATTTGTATTACTTCTACTGTATATAAAGATAAGTAAATTGAAGCTCAGAGTTGTTAAGTGATTGATACAAGGTTACACACTAAGTGGCAAAGCCAGGATTCAAACCCAAATCTGTCTGACTGCTGTTAAGGACCAGGAGCATGAGTTTGGAATGTGGGCGGTGGTCGTCTTAACCTCCAGACTTACCTCCTGCACAGAAACCCCAGCTGCGAGGTCCACCAGGAGCCGGTGACATACACAGCTATTG
........................................................................................................................................((((((..((((((((((....(((((.....))))).....)))))))))).)))))).......................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189786SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577746(Rovira)
total RNA. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR189784SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR040037(GSM532922)
G243T. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029128(GSM416757)
H520. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATGT............................................................................................24199.0099.0028.0026.00-1.004.005.00-2.001.002.003.001.001.002.002.00---1.002.001.00--2.002.002.00--1.00--1.00-1.00---------------1.00--1.00--1.001.00------1.001.00------1.00--1.00--
......................................................................................................................................ACCAGGAGCATGAGTTTGGAAT..............................................................................................22123.0023.00--3.001.001.00--1.00----1.00--2.001.00-1.00-1.00-----1.00-------1.00---1.001.00--1.001.00--1.00-1.00-----1.00-----1.00---------1.00------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAACGT............................................................................................2417.004.00---3.00--4.00----------------------------------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATG.............................................................................................2316.006.00--2.00-------------------1.00-----------------1.001.00-----1.00-----------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAA...............................................................................................2114.004.00-----------1.00--------------------1.00----------------------------1.00---1.00-----------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATA.............................................................................................2313.0023.00--1.00-----------------------------------------1.00---------------------1.00----------
..........................................................................................................................................GGAGCATGAGTTTGGAATGT............................................................................................2013.003.00--------3.00--------------------------------------------------------------------
.......................................................................................................................................CCAGGAGCATGAGTTTGGAATGT............................................................................................2313.003.00---------1.00-----------------------------------1.00---------------------------1.00---
......................................................................................................................................ACCAGGAGCATGAGTTTG..................................................................................................1813.003.00--1.00--------------------------------------------------1.00---1.00-------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGA................................................................................................2013.003.00-----------------2.00------------------------------------------------------1.00----
......................................................................................................................................ACCAGGAGCATGAGTTTGGAAA..............................................................................................2212.004.00----------------------1.00--------------1.00---------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGG.................................................................................................1911.001.00----------------1.00------------------------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTTT.................................................................................................1911.001.00--------------------------------------------------1.00--------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATGC............................................................................................2411.006.001.00----------------------------------------------------------------------------
.......................................................................................................................................CCAGGAGCATGAGTTTGGAAAGT............................................................................................231.000.00---1.00-------------------------------------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATGTGGGCGGT.....................................................................................3111.001.00---------------------1.00-------------------------------------------------------
................................................................................................................................................................................CCTCCAGACTTACCTCCTGCAC....................................................2211.001.00-----------------------------1.00-----------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGA.................................................................................................1911.003.00--------------------------------------------------------------------1.00--------
.................................................................................................................................................................................CTCCAGACTTACCTCCTGAAA....................................................211.000.00----------------------------------------------------------1.00------------------
....................................................................................................................................................................................................................................CCGGTGACATACACATCA....181.000.00------------------------------------1.00----------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGACTGT............................................................................................2411.003.001.00----------------------------------------------------------------------------
.................................................................................................................................................................................CTCCAGACTTACCTCCTGCAT....................................................211.000.00--------------------------------------------------------------1.00--------------
...................................................................................................................................AGGACCAGGAGCATGAGTTTGGAATGTGGGC........................................................................................3111.001.00---------------------1.00-------------------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGATA..............................................................................................2211.003.00-----------------------------------------------------------1.00-----------------
......................................................................................................................................ACCAGGAGCATGAGTTT...................................................................................................1711.001.00--1.00--------------------------------------------------------------------------
.......................................................................................................................................................................................ACTTACCTCCTGCACACTG................................................191.000.00---------------------------------------------------1.00-------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATC.............................................................................................2311.0023.00-----------------------------------1.00-----------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATTT............................................................................................2411.0023.00---------------------------1.00-------------------------------------------------
.........................................................................................................................................AGGAGCATGAGTTTGGAATGTGA..........................................................................................231.000.00---------------------------------------------------------------------1.00-------
................................................CAGAGTTGTTAAGTGATTGATA....................................................................................................................................................................................2211.001.00-------------------------------------------------------------------1.00---------
.......................................................................................................................................CCAGGAGCATGAGTTTGGAATG.............................................................................................2211.001.00-------1.00---------------------------------------------------------------------
.................................................................................................................................................................................CTCCAGACTTACCTCCTGC......................................................1920.500.50---------------------------------------------------------------------------0.50-
...................................................................................................................................................................................................................................GCCGGTGACATAC..........1360.170.17----------------------------------------------------------------------------0.17
..............................................................................................................................TGTTAAGGACCAGGA.............................................................................................................1580.120.12-----------0.12-----------------------------------------------------------------

Antisense strand
GTTATTTGTATTACTTCTACTGTATATAAAGATAAGTAAATTGAAGCTCAGAGTTGTTAAGTGATTGATACAAGGTTACACACTAAGTGGCAAAGCCAGGATTCAAACCCAAATCTGTCTGACTGCTGTTAAGGACCAGGAGCATGAGTTTGGAATGTGGGCGGTGGTCGTCTTAACCTCCAGACTTACCTCCTGCACAGAAACCCCAGCTGCGAGGTCCACCAGGAGCCGGTGACATACACAGCTATTG
........................................................................................................................................((((((..((((((((((....(((((.....))))).....)))))))))).)))))).......................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189786SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577746(Rovira)
total RNA. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR189784SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR040037(GSM532922)
G243T. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029128(GSM416757)
H520. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
...................................GTAAATTGAAGCTCAACA..................................................................................................................................................................................................... 181.000.00------------------------------1.00----------------------------------------------