ID: uc001bfj.61
GENE: HSPG2(61)
chr1:22191517-22191827-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO3.ip 		(5)
B-CELL 		(1)
BRAIN 		(17)
BREAST 		(26)
CELL-LINE 		(3)
CERVIX 		(3)
FIBROBLAST 		(9)
HEART 		(6)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(47)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CAGCGCTGCAGGGCCCTGAGAGGAGGAGCTACGAGATCATGTTCCGAGAGGTAAGGGGCACCTGGCCATGCTGTGTCTAACCCCACCCCACCCTCCACCCTGACTCAGAGCCTGGCTTTGATACCCACCCTGTCTCTCGCTCCCCAACCTTCACCTGGCAGCCCTCAGTCAGTGCCTGTAAGGCAGGATTTGGGGGGTGGTAACTGTAGGAGCAGCCCACAAAGCCCACTGCCCCCGCCCACGTTGCCACCCCCAACCCAGGAATTCTGGCGCCGGCCCGATGGGCAGCCGGCCACACGCGAGCACCTCCT
................................................................................................................................................................................................((((((((((((.((.((.((((.............)))).)).))....)))))))))))).........................................................
..........................................................................................................................................................................................187.......................................................................261................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040008(GSM532893)
G727N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR038862(GSM458545)
MM472. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577453(Rovira)
total RNA. (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577588(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR029130(GSM416759)
DLD2. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGC..................................................................................................23176.0076.0016.0013.001.00-3.002.00-3.00-1.002.002.001.001.001.001.00-------2.002.001.00-1.002.002.00--1.00--1.001.001.00-1.00--1.00--1.00-3.00---2.00---1.00--1.00--------1.001.00--1.00--1.00-------------------------------------1.00----------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAG...................................................................................................22160.0060.0014.0010.008.002.00-1.00---1.00-1.001.00-2.001.001.001.00-----------1.00--1.00-1.00-----1.002.001.00---2.00--1.00---1.00---------------1.00--------1.00--------1.00----------1.00----1.00-------------1.00-----------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAG...................................................................................................23158.0058.0010.008.0013.003.00--3.001.00--2.001.002.00--1.001.00--1.00--1.00---2.00-----------1.001.00--1.00-----2.00---------------------1.00---------------------------------------------1.00------1.001.00----
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGC..................................................................................................24148.0048.005.004.004.005.002.003.002.00-1.00--1.001.00-1.00-2.001.00--4.001.002.00----------2.001.00----1.00---1.00----------1.00--1.00--------------------------1.00-------1.00------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGT..................................................................................................23118.0060.00-7.00---------1.00-2.00------------------1.00----1.00---1.00---------------------------------1.00----------1.00--------1.00--------------1.00---------1.00--------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGT..................................................................................................24116.0058.008.00-2.001.00----1.00-------------------------1.00---1.00-1.00------------------------------------------------------------------------------1.00---------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGA..................................................................................................23113.0060.00----1.00----2.00---------1.00-1.00-1.00----1.00----------------------1.00--1.00-----------------1.00----------------1.00---------------1.00---1.00-------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAG...................................................................................................21112.0012.003.00---------------------1.00------------------------------------2.00--2.002.00-------------1.00---------------------1.00-----------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGA....................................................................................................22112.0012.00-1.001.002.001.00----------1.00--------------1.00-----1.00------------------------1.00--1.00-----------1.00------1.00---------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGC..................................................................................................22110.0010.001.00---1.00--1.00-----1.00-----------------------------1.00-----------1.001.00-------------1.00--2.00-------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGA....................................................................................................2119.009.002.00-----1.00--1.00---------------1.00---------1.00---------1.00---1.00---------------------1.00---------------------------------------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGAG...................................................................................................2418.008.008.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCTT................................................................................................2516.0076.001.00-----------------------------2.00-----------------1.00-----------------1.00----------------------------------1.00---------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGG.....................................................................................................2216.006.005.00-1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAAT..................................................................................................2315.009.004.00-------------------------------------------------------------------------------------------------------------------------1.00------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGA..................................................................................................2415.0058.00-------------------1.00----------------1.001.00-----------------------------------------------1.00---------------------------1.00---------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGA....................................................................................................2015.005.004.00--------------------------------------------------------------------------------------------1.00-----------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAA...................................................................................................2215.009.001.00-----------------2.00-------------------1.00-1.00----------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCATT...............................................................................................264.000.00----------------------------------------------1.00--------------1.00----1.00-1.00------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCAT................................................................................................264.000.00--------1.00------------------------1.00----------------------1.00--------1.00---------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCT.................................................................................................2414.0076.00--1.00--1.00---------------------------------------------------1.00-----------------------1.00-----------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAAT...............................................................................................264.000.00--3.00--------------------1.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGG.....................................................................................................2114.004.001.00-1.00------------1.00----------------------------------1.00------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGG..................................................................................................2413.0058.003.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................AGGAATTCTGGCGCCGGC..................................1813.003.00----2.00---------------------------------------------1.00------------------------------------------------------------------------------
.AGCGCTGCAGGGCCCTGAGAGGA...............................................................................................................................................................................................................................................................................................2313.003.00--3.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCA.................................................................................................2313.003.00------------------2.00---------------------------------------------------------------------------1.00----------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCT.................................................................................................2512.0048.00--------------------------------------------------1.00------------------1.00-----------------------------------------------------------
.................GAGAGGAGGAGCTACGAGATC.................................................................................................................................................................................................................................................................................2112.002.00------------------------1.00------------------------------------------1.00-------------------------------------------------------------
.AGCGCTGCAGGGCCCTGAGAGGAG..............................................................................................................................................................................................................................................................................................2412.002.00--------------------------------------------2.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGTT.................................................................................................2412.0060.00-----------------2.00---------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAT................................................................................................252.000.00--------1.00---------------------------------------------------1.00--------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGG.....................................................................................................2012.002.00------1.00-------------------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGT..................................................................................................2212.0012.00---------1.00----1.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCATT...............................................................................................2512.003.00------------------------1.00------------------1.00-------------------------------------------------------------------------------------
................................GAGATCATGTTCCGAGAG.....................................................................................................................................................................................................................................................................1812.002.00---------------------------------------------1.00------------------------------------------------------------1.00----------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAAA..................................................................................................2211.005.00-------------------------------------------------------------------------------------------------------------------1.00-------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGA....................................................................................................2311.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
.................................AGATCATGTTCCGAGAGGTAAGGGGCA...........................................................................................................................................................................................................................................................2711.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................CACCCCACCCTCCACGCCC.................................................................................................................................................................................................................191.000.00--------------------------------------------------------------------------------------------------------1.00------------------------
...............CTGAGAGGAGGAGCTACGAGA...................................................................................................................................................................................................................................................................................2111.001.00----------1.00----------------------------------------------------------------------------------------------------------------------
..GCGCTGCAGGGCCCTGAGAGGAGGAGCT.........................................................................................................................................................................................................................................................................................2811.001.00-------------------------------1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCCT................................................................................................2511.0076.00-------------------------------------------------------------------------------------------------1.00-------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCT.................................................................................................2311.0010.00-------------------------------------------------------------------------------------------1.00-------------------------------------
....................................................................................................................................................................................................................................................................................................CCACACGCGAGCACCTC..1711.001.00----------------------------------------------------------------------------------------------------------------------1.00----------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGCGA..................................................................................................2311.002.00----1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCAT................................................................................................2411.003.00--------1.00------------------------------------------------------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCATG..............................................................................................................................................................................................................................................................................2611.001.00-------------------------------1.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCGCCCACGTTGCCACCCCCA........................................................2411.001.00-----------------------------------------------------------------------------------------------------------1.00---------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCATT...............................................................................................231.000.00-----------------------------------------------------------------1.00---------------------------------------------------------------
.....................GGAGGAGCTACGAGATCATGTT............................................................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------------------------------------------------------1.00---
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCATTTT.............................................................................................291.000.00----------1.00----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................GGGGGTGGTAACTGTAGGAGCATT...............................................................................................241.000.00-------------1.00-------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGA..................................................................................................2211.0012.00------------------------------------------------------------1.00--------------------------------------------------------------------
.......................AGGAGCTACGAGATCATGTT............................................................................................................................................................................................................................................................................2011.001.00----------------------------------------------------------------------------------------------------1.00----------------------------
.....................................................................................................................................................................................................................................................................GAATTCTGGCGCCGGCCCGATGGG..........................2411.001.00----------------------------------------------------------------------------------1.00----------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAT...................................................................................................2311.0012.00-------------------------------------------------1.00-------------------------------------------------------------------------------
.....CTGCAGGGCCCTGAGAGGAGGAGCTACG......................................................................................................................................................................................................................................................................................2811.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................GCCCACGTTGCCACCCCCAACCCAG..................................................2511.001.00------------------------------------------------------------------------------------------------------------------1.00--------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAG......................................................................................................2011.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCATA..............................................................................................................................................................................................................................................................................261.000.00-------------------------------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGAG.................................................................................................2511.0058.00---------------------1.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGTT.................................................................................................2511.0058.00-------1.00-------------------------------------------------------------------------------------------------------------------------
...........GGCCCTGAGAGGAGGAGC..........................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------1.00----------------------------------------------------------------------------
.................GAGAGGAGGAGCTACTGA....................................................................................................................................................................................................................................................................................181.000.00----------------------------------------------------------1.00----------------------------------------------------------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCAT................................................................................................221.000.00------------------------------------------------------------------------------------------------------1.00--------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTA.......................................................................................................1811.001.00--------------------------------------------1.00------------------------------------------------------------------------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCATC...............................................................................................231.000.00--------1.00------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCGCCCACGTTGCCACC............................................................2011.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAG......................................................................................................2111.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCA................................................................................................................................................................................................................................................................................2411.001.00---------------------------------------------------------------------------------------------------------------1.00-----------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGAA.................................................................................................2311.0012.00--------------------------------------------------------------------------------1.00------------------------------------------------
...CGCTGCAGGGCCCTGAGAGGAGGAGCTAAG......................................................................................................................................................................................................................................................................................301.000.00------------------------------------------------------------------------1.00--------------------------------------------------------
...........GGCCCTGAGAGGAGGAGCTAC.......................................................................................................................................................................................................................................................................................2111.001.00----------------------------------------------------1.00----------------------------------------------------------------------------
..........GGGCCCTGAGAGGAGGAG...........................................................................................................................................................................................................................................................................................1821.001.00----------------------------------------------------0.50-------------------------------------------------------------------------0.50--
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAA................................................................................................251.000.00-------------------------------------------------------------------------------------------------------------------------1.00-------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGAGC..................................................................................................2511.001.00-----------------------------------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGTAGC..................................................................................................2411.001.00-------------------------1.00-------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAAT..................................................................................................2411.0012.00----------------------------------------------------------------1.00----------------------------------------------------------------
.....................GGAGGAGCTACGAGA...................................................................................................................................................................................................................................................................................1520.500.50-----0.50---------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TGCCCCCGCCCACGTT..................................................................1620.500.50--------------------------------------------------------------------------0.50------------------------------------------------------
................TGAGAGGAGGAGCTACG......................................................................................................................................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------------------------------------0.50-
...................................ATCATGTTCCGAGA......................................................................................................................................................................................................................................................................1420.500.50---------------------------------------------------------------------------0.50-----------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCGCCCACGTT..................................................................1490.110.11----------------------------------------------------------------------------0.11----------------------------------------------------
...................................................................................................................................................................................................................................................................AGGAATTCTGGCG.......................................13100.100.10----0.10----------------------------------------------------------------------------------------------------------------------------

Antisense strand
CAGCGCTGCAGGGCCCTGAGAGGAGGAGCTACGAGATCATGTTCCGAGAGGTAAGGGGCACCTGGCCATGCTGTGTCTAACCCCACCCCACCCTCCACCCTGACTCAGAGCCTGGCTTTGATACCCACCCTGTCTCTCGCTCCCCAACCTTCACCTGGCAGCCCTCAGTCAGTGCCTGTAAGGCAGGATTTGGGGGGTGGTAACTGTAGGAGCAGCCCACAAAGCCCACTGCCCCCGCCCACGTTGCCACCCCCAACCCAGGAATTCTGGCGCCGGCCCGATGGGCAGCCGGCCACACGCGAGCACCTCCT
................................................................................................................................................................................................((((((((((((.((.((.((((.............)))).)).))....)))))))))))).........................................................
..........................................................................................................................................................................................187.......................................................................261................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040008(GSM532893)
G727N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR038862(GSM458545)
MM472. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577453(Rovira)
total RNA. (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577588(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR029130(GSM416759)
DLD2. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................................................................AGCCCTCAGTCAGTG......................................................................................................................................... 1571.711.71----0.14--------------------0.710.430.14----------------------------------------------------------------------------------------------------0.29
...........................................................................................................................................................................................................................................CGCCCACGTTGCCACCCG.......................................................... 181.000.00------------------------------------------------------------------------------------------------1.00--------------------------------
....................................................................................................................................................CTTCACCTGGCAGCCAACC................................................................................................................................................ 191.000.00------------------------------------------------------------------------------------------------------------1.00--------------------
...........................................CCGAGAGGTAAGGGGCCGC......................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................GCCACCCCCAACCCAGGATGGG............................................ 221.000.00----------------------------------------------------------------------------------------1.00----------------------------------------
...................................................................................CACCCCACCCTCCACCCTGTCA.............................................................................................................................................................................................................. 221.000.00------------------------------------------------------------------------------------------1.00--------------------------------------
...........................................CCGAGAGGTAAGGGGC............................................................................................................................................................................................................................................................ 1611.001.00-------------------------------------------------------------------------------1.00-------------------------------------------------
............................................CGAGAGGTAAGGGGC............................................................................................................................................................................................................................................................ 1530.330.33-----------------------------------------------------0.33---------------------------------------------------------------------------