ID: uc001ako.4
GENE: WDR8(4)
chr1:3551589-3551773-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(18)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(2)
HELA 		(4)
LIVER 		(1)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCTGGAGCCCCAGCAGTCAGTTCCTGGCAGTTGGGAGCTATGATGGAAAGGTGGGAACCAGTGCAGGGCACTCAGGAAGTCCGACCGCCCAGCGGGCCGGGCCCTGCCTCACCTGTGCATGGTTTCCTTCCTCAGGTGCGCATCCTTAATCACGTGACTTGGAAAATGATCACGGAGTTTGGGCA
....................................................(((((((((((((((.....((((..(((((.((((...))))..))))))))).....))))))).))))))))..........................................................
..................................................51..................................................................................135................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR038858(GSM458541)
MEL202. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040039(GSM532924)
G531T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040025(GSM532910)
G613T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784
..................................................GTGGGAACCAGTGCAGGGCAC..................................................................................................................21123.0023.009.006.00---1.00------1.001.00-----2.001.00----1.00-------------1.00--------------
..................................................GTGGGAACCAGTGCAGGGC....................................................................................................................19120.0020.003.002.001.00--1.00------1.00-1.00--1.00----1.001.001.00-1.001.00--1.00-----1.00-1.00---1.00-1.00---------
..................................................GTGGGAACCAGTGCAGGGCA...................................................................................................................2019.009.004.00---------3.00------------------1.00-------1.00----------------
..................................................GTGGGAACCAGTGCAGGGCACATC...............................................................................................................2416.0023.00----6.00-------------------------------------------------
..................................................GTGGGAACCAGTGCAGGGAAC..................................................................................................................2126.001.00---6.00--------------------------------------------------
..................................................GTGGGAACCAGTGCAGGGCACTC................................................................................................................2315.005.001.00------3.00-----------------------------------1.00----------
..................................................GTGGGAACCAGTGCAGGGCACT.................................................................................................................2214.004.00--4.00---------------------------------------------------
.................................................................................................................................................................GAAAATGATCACGGAGTTTGGGCA2413.003.00--------3.00---------------------------------------------
........................TGGCAGTTGGGAGCTATG...............................................................................................................................................1813.003.00-----------3.00------------------------------------------
..................................................GTGGGAACCAGTGCAGGGCAT..................................................................................................................2113.009.00--2.00-----------------------------1.00---------------------
..................................................GTGGGAACCAGTGCAGGGCAA..................................................................................................................2112.009.00-1.00-----------1.00----------------------------------------
.............................GTTGGGAGCTATGATGGAAAGGTGC...................................................................................................................................252.000.00----------------2.00-------------------------------------
..................................................GTGGGAACCAGTGCAGGGCACTCAGG.............................................................................................................2612.002.00---------------------2.00--------------------------------
..................................................GTGGGAACCAGTGCAGGGCACTCA...............................................................................................................2411.001.00---------------1.00--------------------------------------
......................................................................................................................................................CACGTGACTTGGAAAATG.................1811.001.00----------------------------------------1.00-------------
.....................................................................................................................................................................ATGATCACGGAGTTTGGGCA2011.001.00---------1.00--------------------------------------------
......................CCTGGCAGTTGGGAGCTATGATGGA..........................................................................................................................................2511.001.00-----------------------------------------1.00------------
......................................................GAACCAGTGCAGGGCAC..................................................................................................................1711.001.00----------------------------1.00-------------------------
..............................................................................................................................................................TTGGAAAATGATCACGGAGTTTGGGC.2611.001.00-----1.00------------------------------------------------
.......................................................................................................................................................................GATCACGGAGTTTGGGCA1811.001.00------------------1.00-----------------------------------
..................................................GTGGGAACCAGTGCAGGGCACTA................................................................................................................2311.004.00-1.00----------------------------------------------------
.........................................................................................................................................................GTGACTTGGAAAATGATCACGGAGTTTGGGC.3111.001.00------1.00-----------------------------------------------
..................................................GTGGGAACCAGTGCAGGGCACA.................................................................................................................2211.0023.00---------1.00--------------------------------------------
..................................................GTGGGAACCAGTGCATGGC....................................................................................................................191.000.00-----1.00------------------------------------------------
..................................................GTGGGAACCAGTGCAGGG.....................................................................................................................1821.001.00-0.50-----------0.50----------------------------------------
...................................................................................................................................................................AAATGATCACGGAGTTTG....1811.001.00--------------------1.00---------------------------------
...................................................TGGGAACCAGTGCAGGGCA...................................................................................................................1921.001.00------0.50-----0.50-----------------------------------------
...............................................................................................................................................................TGGAAAATGATCACGGAGTT......2011.001.00------------------1.00-----------------------------------
..................................................GTGGGAACCAGTGCAGGGCACAAT...............................................................................................................2411.0023.00--1.00---------------------------------------------------
...........................................................................................................................................................GACTTGGAAAATGATCACGGAGTTTGGGC.2911.001.00-----1.00------------------------------------------------
........................................................................................................................................................CGTGACTTGGAAAATGATCACGG..........2311.001.00----------------------------------1.00-------------------
..................................................GTGGGAACCAGTGCAGGGCATT.................................................................................................................2211.009.00---------------------------------1.00--------------------
................................................................................................................................................................GGAAAATGATCACGGAGTT......1911.001.00---------1.00--------------------------------------------
............................................................................................................TCACCTGTGCATGGTTTCCTTTA......................................................231.000.00---------------------------------------------1.00--------
............GCAGTCAGTTCCTGGCAGTTGGAAG....................................................................................................................................................251.000.00-----------------------------------1.00------------------
...........................................................................................................................................................GACTTGGAAAATGATCACGGAG........2211.001.00-----------------1.00------------------------------------
........................TGGCAGTTGGGAGCTATGATGGAAAGGT.....................................................................................................................................2811.001.00------1.00-----------------------------------------------
..................................................GTGGGAACCAGTGCAGGGCACTAA...............................................................................................................2411.004.00---------------1.00--------------------------------------
..................................................GTGGGAACCAGTGCAGGCC....................................................................................................................191.000.00-1.00----------------------------------------------------
..................................................GTGGGAACCAGTGCAGGGCAAAAA...............................................................................................................2411.009.001.00-----------------------------------------------------
........................TGGCAGTTGGGAGCTATGATGG...........................................................................................................................................2211.001.00------1.00-----------------------------------------------
.CTGGAGCCCCAGCAGT........................................................................................................................................................................1640.250.25-----------------------------------------------0.25------
.............................................................................AGTCCGACCGCC................................................................................................1290.110.11-----------------------------------------------------0.11

Antisense strand
CCTGGAGCCCCAGCAGTCAGTTCCTGGCAGTTGGGAGCTATGATGGAAAGGTGGGAACCAGTGCAGGGCACTCAGGAAGTCCGACCGCCCAGCGGGCCGGGCCCTGCCTCACCTGTGCATGGTTTCCTTCCTCAGGTGCGCATCCTTAATCACGTGACTTGGAAAATGATCACGGAGTTTGGGCA
....................................................(((((((((((((((.....((((..(((((.((((...))))..))))))))).....))))))).))))))))..........................................................
..................................................51..................................................................................135................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR038858(GSM458541)
MEL202. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040039(GSM532924)
G531T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040025(GSM532910)
G613T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784
...........................................................................GAAGTCCGACCGC................................................................................................. 1371.141.14--------------0.14-------------------------------0.29-0.140.140.140.140.14-
..........CAGCAGTCAGTTCCTAAGC............................................................................................................................................................ 191.000.00--------------1.00---------------------------------------
.......................................................................................CCCAGCGGGCCGGGCAGT................................................................................ 181.000.00-------------------------------1.00----------------------
...........................................................................................GCGGGCCGGGCCCTGC.............................................................................. 1620.500.50-0.50----------------------------------------------------
.....................................................................................CGCCCAGCGGGCCGGGC................................................................................... 1730.330.33-0.33----------------------------------------------------