ID: uc001aea.20
GENE: ACAP3(20)
chr1:1238612-1238861-


(2)
AGO2.ip 		(1)
B-CELL 		(10)
BREAST 		(24)
CELL-LINE 		(4)
CERVIX 		(2)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
CCACCCTCCCCTCCCAGACGGGCCTCCAAGCCCCAGGCAGGCCCAGGCGTGAGGAAGCTGCACCGGGGCACTGAGTCCTGAGTGCCAACGCCCTGAGTGGAACCTACCCTGGGAGCTCTTCCTGCCTCTGAGTGGCCGTGTGTGGTGGCGAGTGCAGGCGCCAGTGCCCACTGTGCTCACCACGCCCCGCTGGCCCACAGCTGGTGAAGCTGTGCAGTGGCATGGTGGAAGCCGGTAAGGCCTACGTCAG
...................................................................................................................................(((((((((((((((((((((((..((((....)))))))).))).))))))))...)).)))).))....................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189783SRR029126(GSM416755)
143B. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR029124(GSM416753)
HeLa. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189785SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038861(GSM458544)
MM466. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040014(GSM532899)
G623N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGC...............................................................................................23115.0015.00-4.00----3.001.002.001.00-2.00-----1.00---------1.00---------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGC........................................................2118.008.00---1.00--------2.00-2.001.00--1.00-----------------------1.00------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGT.................................................................................................2116.006.00----------------1.00------------1.001.00------------1.00---------1.00-1.00-----
....................................................................................................................................TGGCCGTGTGTGGTGGCGAG..................................................................................................2014.004.00---1.002.00-----------------------------1.00--------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCA..............................................................................................2414.004.00---------1.00-------------------------------------1.001.00-----1.00------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCC.......................................................2213.003.00----------2.00--1.00-----------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCT..............................................................................................2412.0015.00------------------------1.00----------------1.00-------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGA...............................................................................................2312.002.00---1.00---1.00-----------------------------------------------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCAT....................................................2312.001.00--------------------1.00-----------------------1.00----------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTG................................................................................................2212.002.001.00--------------------------------1.00---------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAG.............................................................................................2512.002.002.00------------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCACT...................................................2611.001.00--1.00----------------------------------------------------------
...CCCTCCCCTCCCAGACG......................................................................................................................................................................................................................................1711.001.00----------------------------------------------------1.00--------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCA.......................................................2211.008.00------------------------------------1.00------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCAGA...................................................261.000.00-1.00-----------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGGGC...............................................................................................2311.004.00---------------------------------------------1.00---------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGAT.......................................................221.000.00--------------------------1.00----------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCAAT.....................................................2411.008.00-----1.00-------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGCGCA..............................................................................................2411.004.00--1.00----------------------------------------------------------
..........................................................................................................................................................................................................GGTGAAGCTGTGCAGTGGCATGGTGGAAGCC.................3111.001.00---------------------------------------1.00---------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGA........................................................211.000.00-----------------------1.00-------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGT...............................................................................................2311.002.00--------------------------------------1.00----------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAA.............................................................................................2511.004.00-------------------------------1.00-----------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGAT...........................................................181.000.00----------------------1.00--------------------------------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCATAA..................................................2511.001.00----------------------------------------1.00--------------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGC........................................................1911.001.00---1.00---------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAGT............................................................................................2611.002.00-------------1.00-----------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAT.............................................................................................2511.004.00-------------------------1.00-----------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAAC............................................................................................2611.004.00--------------------------------------------------1.00----------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGCGC...............................................................................................2311.004.00--1.00----------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGAT................................................................................................2211.004.00-------------------------------------------------1.00-----------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAT..................................................................................................201.000.00----1.00--------------------------------------------------------
...................................................AGGAAGCTGCACCGGGGC.....................................................................................................................................................................................1811.001.00---------------------------------------------------------1.00---
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGGG................................................................................................2211.004.00---1.00---------------------------------------------------------
........................................................................GAGTCCTGAGTGCCAACGCCCTGAG.........................................................................................................................................................2511.001.00---------------------1.00---------------------------------------
........................................................................................................................................................................................................................GTGGCATGGTGGAAGCCGGTA.............2111.001.00-----------------------------------1.00-------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCTCT...................................................261.000.00--1.00----------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCAC....................................................2511.001.00----------------------------------------------1.00--------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCA.....................................................2211.001.00--------------------------------------------------------1.00----
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTTTTT.............................................................................................2511.006.00-----1.00-------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCT.......................................................2211.008.00-------------------1.00-----------------------------------------
......................................................................................................................................................................CCCACTGTGCTCACCACGCCCCGCTGGCCCACA...................................................3311.001.001.00------------------------------------------------------------
..............................................................................................................................TCTGAGTGGCCGTGTGTGGAA.......................................................................................................211.000.001.00------------------------------------------------------------
..............................................................................................................................................................................GCTCACCACGCCCCGCTGGCCCA.....................................................2311.001.00-----1.00-------------------------------------------------------
......................................................................................AACGCCCTGAGTGGAACCTACCCT............................................................................................................................................2411.001.00----------------------------1.00--------------------------------
..............................................................................................................................................................................GCTCACCACGCCCCGCT...........................................................1720.500.50----------------------------------------------------------0.50--
.......................................................................................................................................CCGTGTGTGGTGGCGAGT.................................................................................................1820.500.50---------------0.50---------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCG....................................................................................................1830.330.33------------------------------------------------------------0.33
.........................................................................................................ACCCTGGGAGCTCTTCCT...............................................................................................................................1830.330.33-----------------------------------------------------------0.33-

Antisense strand
CCACCCTCCCCTCCCAGACGGGCCTCCAAGCCCCAGGCAGGCCCAGGCGTGAGGAAGCTGCACCGGGGCACTGAGTCCTGAGTGCCAACGCCCTGAGTGGAACCTACCCTGGGAGCTCTTCCTGCCTCTGAGTGGCCGTGTGTGGTGGCGAGTGCAGGCGCCAGTGCCCACTGTGCTCACCACGCCCCGCTGGCCCACAGCTGGTGAAGCTGTGCAGTGGCATGGTGGAAGCCGGTAAGGCCTACGTCAG
...................................................................................................................................(((((((((((((((((((((((..((((....)))))))).))).))))))))...)).)))).))....................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189783SRR029126(GSM416755)
143B. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR029124(GSM416753)
HeLa. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189785SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038861(GSM458544)
MM466. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040014(GSM532899)
G623N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
..........................................................................................................................................................CAGGCGCCAGTGCCCACTAGT........................................................................... 211.000.001.00------------------------------------------------------------
.................................................................................................................AGCTCTTCCTGCCTCGGTG...................................................................................................................... 191.000.00--------------------------------1.00----------------------------
......................................................................................................................................................................................CGCCCCGCTGGCCCAGGG.................................................. 181.000.00---------------------------------------------------1.00---------
..........................................................................................................................................................................CTGTGCTCACCACGCAGCG............................................................. 191.000.00-------------------------------------1.00-----------------------
...............................................................................................................GGAGCTCTTCCTGCCTCTT........................................................................................................................ 191.000.00--1.00----------------------------------------------------------