ID: hsa-mir-6886
GENE: LDLR(8)
chr19:11224076-11224260+


(1)
AGO1.ip 		(5)
AGO2.ip 		(1)
AGO3.ip 		(11)
B-CELL 		(5)
BRAIN 		(21)
BREAST 		(52)
CELL-LINE 		(3)
CERVIX 		(2)
FIBROBLAST 		(5)
HEART 		(7)
HELA 		(4)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(29)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GCCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAGGTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTGCCTCAGCACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCA
..................................................................................(((((.((((.((((((((........)).)))))).))))..))))).......................................................
..........................................................................75..........................................................135................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038863(GSM458546)
MM603. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		TAX577453(Rovira)
total RNA. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR038858(GSM458541)
MEL202. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577579(Rovira)
total RNA. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189785GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR343334SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...............................................................................CCCGCAGGTGAGATGAGGGCT.....................................................................................21185.0085.003.006.006.0012.004.00-4.002.006.00-2.00-2.001.00-2.001.001.00---2.004.00--1.00--1.00--2.003.001.00--------1.001.00--1.001.00---1.00--2.00---1.00------1.00-----1.00-1.001.00------1.00---------1.00-------1.00---1.00-1.00----------1.00--------------1.00-------------------
...............................................................................CCCGCAGGTGAGATGAGG........................................................................................18134.0034.0022.00--------3.001.00---5.00--------------------1.00-------1.00---------------------------------------------1.00-------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTT...................................................................................23126.0085.00-6.00--2.00-1.001.00---2.00----1.00-------1.002.00--------1.00-1.002.00------1.00----1.00-----1.00---------------------1.00------------1.00----------1.00-------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTT....................................................................................22120.0085.002.007.00--1.00-2.00-1.001.00------1.001.00---------------------1.00-----------1.001.00-------------------1.00------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGG.......................................................................................19119.0019.00---5.00-2.001.001.00-1.001.00---------4.00-------1.00---------------------1.00---------------------------------1.00--1.00---------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGC......................................................................................20119.0019.006.00----1.001.001.00-1.001.00-------------------2.00---------------------1.00----------1.00-------------------1.00-----------1.00----------------------1.00--------1.00-----------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCT.....................................................21113.0013.00--2.00-------1.00-1.00--------1.00-----------------------1.00-------1.00----------------1.00---------1.00---------------------1.00--------1.00-------------1.00------------1.00------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAT...................................................................................23113.0085.002.001.00-----------1.00----1.00--------------1.00--1.00--1.00---------------------------------------1.00------------------------------1.00-1.001.00--------------1.00----------------------
...............................................................................CCCGCAGGTGAGATGAG.........................................................................................17112.0012.006.00----3.00----------1.00---------------------------------------------------------------------------------1.00------------------------------1.00---------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCC...................................................................................23110.0010.00-3.00----------------------1.00--------1.00---------------1.00-----------------1.00------------------------------------1.00---------------------1.00--------1.00---------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCA...................................................2319.009.00--5.00-----------------------------------2.00----------------------------------------------------------1.00---------------------------------------1.00-------------
................................................................................CCGCAGGTGAGATGAGGGCTCC...................................................................................2219.009.00-2.001.00-3.00--------1.00-------------1.00-------------------------------------------------------------------------------------------1.00-------------------------------
..............................................................................GCCCGCAGGTGAGATGAGG........................................................................................1918.008.00-----8.00-------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTT..................................................................................2418.0085.00-------1.00---1.00------------1.00---------1.00---------1.00---2.00---------------------------------1.00--------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTA...................................................................................2318.0085.002.001.00--1.00--------1.00----------1.00---1.00----------------------------------------------------------------1.00---------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGA.......................................................................................1916.0034.001.00--------1.001.00-1.00-------------------------------------1.00---------------------------------------------------------1.00------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCC...................................................................................2115.005.00-1.00-----------1.00-------------1.00------------------------------------------------------------------------------------------------1.00--------1.00-----------------
...............................................................................CCCGCAGGTGAGATGAGGGCTC....................................................................................2215.005.00-2.00------1.00-----------------------------------------------1.001.00---------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTA....................................................................................2214.0085.002.00-----1.00---------------------------------1.00--------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTC....................................................................................2114.004.00--------1.00--1.00---------------1.00--------------------------------------1.00------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTA..................................................................................2413.0085.00-1.00---------1.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCT...................................................................................2313.005.00-1.00----------------------------------------------------------------------------1.00-------1.00----------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATT..................................................................................2413.0085.00----2.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTTT.................................................................................2513.0085.00----1.00--1.00-----------------1.00-----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCT...................................................2313.003.00--3.00----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTC....................................................2213.003.00--1.00-----------------------------------------------------------1.00-------------------------1.00--------------------------------------------------------------
.......ATAGAATCTACTGGTCTGACCTG...........................................................................................................................................................2313.003.00----3.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCG..............................................................................5713.003.00--------------------------3.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCC......................................................2022.002.00----------------------------------0.50-----------------------------------------------------------------------------------------------------------0.500.50-0.50-----
.................................................................................CGCAGGTGAGATGAGGGCTC....................................................................................2012.002.00--2.00----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAA...................................................................................2312.0085.00----------------1.00-----------------------------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTTT...................................................2312.0013.00------------------------------------------------------------------------------------------------1.00------------------------1.00-----------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCA.....................................................................................2112.0019.00------1.00-------------------------------------------------------------------------------------1.00----------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTAT...................................................2312.0013.00-------------------2.00-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCCTA.................................................................................252.000.00------------------2.00------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCT...................................................................................2212.004.00-1.00---------------------1.00-------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGA........................................................................................1812.0012.002.00------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCAA....................................................................................2212.0019.002.00------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTTAAA.................................................................................232.000.00-----------------------------2.00-------------------------------------------------------------------------------------------------------------------------
.......ATAGAATCTACTGGTCTGACCTGTCC........................................................................................................................................................2612.002.00-------2.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTAT..................................................................................2412.0085.00-1.00-----1.00-----------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCCATT................................................................................2412.005.00-------------------2.00-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCATTT..................................................................................2411.0019.00-------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.........................................................................................................................................................................TATGACACCGTCATCCGCG191.000.00-------------------------------------------------------------1.00-----------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATTT.................................................................................2511.0085.00------------------------------------------------------------------------------------------------------------------------------------1.00------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCAA..................................................2411.009.00-----------------------------1.00-------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTT....................................................2211.0013.00---------------------------------------------1.00---------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATG...........................................................................................1511.001.00-------------------------------------------------------------------------------------------------------------------1.00-----------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCAA..................................................................................2411.005.00---------------------------------------------------------1.00---------------------------------------------------------------------------------------------
..................................................................................................................CCTTCTCTCCTCCTGCCTCAGT.................................................221.000.00--------------------------------------------------------------------------------------------------------------------------------------1.00----------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAG..................................................................................2411.0085.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------------------
............................................................................TGGCCCGCAGGTGAGATGAGGAA......................................................................................231.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTAT.................................................................................2511.0085.00----------------------------------------------------------------------------------------------1.00--------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCCACA................................................................................2411.005.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATA..................................................................................2411.0085.00-------------------------------------------------------------------------------------------------------------1.00-----------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCCA....................................................................................2211.0019.00------1.00------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................CAGGTGAGATGAGGGCTAAGT.................................................................................211.000.00------1.00------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGAT.....................................................................................2111.0019.00-------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
......AATAGAATCTACTGGTCTGACCT............................................................................................................................................................2311.001.00--------------------------------------------------------------------1.00----------------------------------------------------------------------------------
.........AGAATCTACTGGTCTGA...............................................................................................................................................................1711.001.00------------------------------------------------------------------------------------------------------------------1.00------------------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTG........................................................7911.001.00--------------------------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCCATT................................................................................2611.0010.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGA......................................................................................2011.0019.00------1.00------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCTTT.................................................................................2511.005.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................GGCCCGCAGGTGAGATGAGGGCTC....................................................................................2411.001.00-----------------------------------------------1.00-------------------------------------------------------------------------------------------------------
..........................CCTGTCCCAGAGAATGATCTGCAG.......................................................................................................................................2411.001.00------------1.00------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................AGCTTGACAGAGCCCACGGCGTCTCTTCCC...............301.000.00---------------------------------------------------------------------------1.00---------------------------------------------------------------------------
..................................................................................................CTCCTGGCGCTGATGC.......................................................................1611.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATG..................................................................................2411.0085.00-------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTAGA..................................................2411.0013.00------------1.00------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGAA......................................................................................2011.0034.00-----------------------------------------------------1.00-------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCAT..................................................2411.009.00----------------------------------------------------------1.00--------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGC.......................................................1921.001.000.50--------------------------------------------------------------------------------------------------------------------------------------------0.50---------
...............................................................................CCCGCAGGTGAGATGAGGGCTGA...................................................................................2311.0085.00-------------------------------------------------------------------------------------------------------------------------------------------1.00-----------
...............................................................................CCCGCAGGTGAGATGAGGGCTTAA..................................................................................2411.0085.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
.....................TCTGACCTGTCCCAGAGAATGATCTGC.........................................................................................................................................2711.001.00-------------------------------------------------------------------------------------1.00-----------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGT.......................................................................................1911.0034.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
...........AATCTACTGGTCTGACC.............................................................................................................................................................1711.001.00------------------------------------------------------------1.00------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTGT...................................................................................2311.0085.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAAAAA......................................................................................2011.001.00-------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCATA.................................................2511.009.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTTAA..................................................................................2311.001.00-----------------------------------------------------------------------------------------------------------1.00-------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCCG....................................................................................2111.001.00------------------------------1.00------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCTAA.................................................2511.003.00-----------------------------------1.00-------------------------------------------------------------------------------------------------------------------
..........GAATCTACTGGTCTGGGCT............................................................................................................................................................191.000.00---------------------1.00---------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAGT..................................................................................2411.0085.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCAT..................................................................................2311.004.00------------------------------------------1.00------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAA..................................................................................2411.0085.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCCAA.................................................................................2411.009.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTTTTT.................................................................................231.000.00---------------1.00---------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTAA.................................................................................2511.0085.00---------------------------------------------------------------------------------------------------------------------1.00---------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTTATT.................................................................................2411.001.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCT.....................................................................................2011.001.00---------------------------------------------------------------------1.00---------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCATT...................................................................................2311.0019.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTCT..................................................................................2411.0085.00----------------------------------------1.00--------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAT..................................................................................2411.0085.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGA..........................................................................................1611.001.00----------------------------------------------------------------1.00--------------------------------------------------------------------------------------
.......................TGACCTGTCCCAGAGAATGATCTGCA........................................................................................................................................2611.001.00------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGC......................................................................................1811.001.00--------------------------------------------------------------------------------------------------------------------------1.00----------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAG................................................................................................................2311.001.00----------------------------------------------------------------------------1.00--------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCTT..................................................................................2411.005.00----------------------------------------------------------------------------------------------------------------------------------------1.00--------------
...............................................................................CCCGCAGGTGAGATGAGGAC......................................................................................2011.0034.00----------------------------------------------------------------------------------------------------------1.00--------------------------------------------
...............................................CAGGTGAGCGTCGCCGGT........................................................................................................................181.000.00----------------------------------------------------------------------------------------------------------------------------------1.00--------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAGA..................................................................................2411.0085.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGC......................................................................................1911.001.00------------------------------------------------------------------------------------------------------------------------1.00------------------------------
...............................................................................CCCGCAGGTGAGATGAGGCCT.....................................................................................2111.0034.00-----------------------1.00-------------------------------------------------------------------------------------------------------------------------------
.........AGAATCTACTGGTCT.................................................................................................................................................................1570.570.57------------------------------------------------------------0.43----------------------------------------------------------------------------------------0.14-
...............................................................................................................TGCCCTTCTCTCCTCCTGCCAAA...................................................2320.502.00-----------------------------------------------------------0.50-------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCGA....................................................2220.502.00------------------------------------------------------------------------------------------------------------------------------------------------0.50------
................................................................................................................GCCCTTCTCTCCTCCTGC.......................................................1840.250.25--------------------------------------------------------------------------------------------------------------------------------------------------0.25----
.........................................................................................................................................................................TATGACACCGTCA...1370.140.14-------------------------------------------------------------0.14-----------------------------------------------------------------------------------------
......AATAGAATCTACTGG....................................................................................................................................................................15100.100.10------------------------------------------------------------------------------------------------------------------------------------------------------0.10

Antisense strand
GCCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAGGTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTGCCTCAGCACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCA
..................................................................................(((((.((((.((((((((........)).)))))).))))..))))).......................................................
..........................................................................75..........................................................135................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038863(GSM458546)
MM603. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		TAX577453(Rovira)
total RNA. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR038858(GSM458541)
MEL202. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577579(Rovira)
total RNA. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189785GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR343334SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.....................................................................GCAGCCTTGGCCCGCAG................................................................................................... 172.000.00---------------2.00---------------------------------------------------------------------------------------------------------------------------------------
.............................GTCCCAGAGAATGATGAGA......................................................................................................................................... 191.000.00--------------------------------------------------------1.00----------------------------------------------------------------------------------------------
....................................................................TGCAGCCTTGGCCCGCA.................................................................................................... 1711.001.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------------------
............................................................................................................................................................CGGCGTCTCTTCCTAACC........... 181.000.00-----------------------1.00-------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................GCGTCTCTTCCTATGACACCG...... 2111.001.00----------------------------------------------------------------------------------------------------1.00--------------------------------------------------
.............................................................................................................GATGCCCTTCTCTCCTGA.......................................................... 181.000.00---------------------------------------------------------------------------------------------------------------------------1.00---------------------------
.........................................................................................................................TCCTCCTGCCTCAGCAC............................................... 1701.001.00---------1.00---------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................CCAGCTTGACAGAGCCGG............................. 181.000.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................CGTCTCTTCCTATGAC.......... 1630.670.67--------------------------------------------------------------------------------------------------------------------------------------------0.67----------
...............................................................................................................................................................CGTCTCTTCCTATGA........... 1550.400.40---------------------------------------------------------------------------------------------------------------------------------------------------0.200.20--