ID: hsa-mir-6863
GENE: SLC12A3(23)
chr16:56938107-56938356+


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(6)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(4)
HELA 		(1)
KIDNEY 		(4)
OTHER 		(1)
RRP40.ip 		(1)
XRN.ip

Sense strand
AGGAGGTGAGCTTGGTGCTCCATTACTCTGAGGGTCCCCTTCTTCCTGGAGACAGGAGACTCTATAAGAATTTATGAGGCAGCAGAGTCTACAAGTAAATCATGAATCCAGTTGAAAATGTTAATGAGGCCATAGACGTGGTGAAGGATTGAGTGACCTCGATGATATGGGAAGTGACCACTCGGCTTTCTCCCGCCCAGTCCCTTCGGCAGGTGAGGCTGAATGAGATTGTGCTGGATTACTCCCGAGA
.........................................................................................................................................((((.(((((.(((((((((((((......))))..))...))))))))))))..))))......................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577589(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189784SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTG...............................................................................................231124.00124.0034.0037.0017.0018.009.001.003.00--1.002.00--------1.00-----1.00-----------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGT................................................................................................221118.00118.0031.0010.0034.002.0021.00-10.007.00-1.00----1.00-----1.00----------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTGA..............................................................................................24160.0060.0019.0012.0015.0014.00---------------------------------
.....................................................................................................................................AGACGTGGTGAAGGATTGAGTGA..............................................................................................23143.0043.0015.009.002.009.007.00---------1.00----------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTGT..............................................................................................24133.00124.0013.00-6.0011.00--2.00--1.00---------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAG.................................................................................................21124.0024.003.00-2.001.00-14.001.00-2.00---------------------1.00------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTGACC............................................................................................26122.0022.00-13.004.002.003.00--------------------------------
...................................................................................................................................ATAGACGTGGTGAAGGATTGAGT................................................................................................23115.0015.0011.00-2.00----------2.00-----------------------
.....................................................................................................................................AGACGTGGTGAAGGATTGAGTG...............................................................................................22113.0013.001.00---12.00--------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTGAC.............................................................................................25113.0013.004.00-3.005.00------1.00--------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTGG..............................................................................................2419.00124.00-8.001.00----------------------------------
...................................................................................................................................ATAGACGTGGTGAAGGATTGAGTG...............................................................................................2417.007.004.002.001.00----------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGA................................................................................................2217.0024.001.00-4.00---1.00---------1.00--------------------
.......................................................................................................................................ACGTGGTGAAGGATTGAGTGACC............................................................................................2316.006.00-4.001.00---1.00------------------------------
.....................................................................................................................................AGACGTGGTGAAGGATTGAGTGACC............................................................................................2515.005.002.003.00-----------------------------------
.......................................................................................................................................ACGTGGTGAAGGATTGAGTGAC.............................................................................................2215.005.00---3.00--1.00---------1.00--------------------
....................................................................................................................................TAGACGTGGTGAAGGATTG...................................................................................................1915.005.00-----3.00--2.00----------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGG................................................................................................2213.0024.00-1.00--2.00--------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGA..................................................................................................2013.003.00-----2.00--1.00----------------------------
........................................................................................................................................CGTGGTGAAGGATTGAGTGACC............................................................................................2212.002.00---2.00---------------------------------
......................................................................................................................................................GAGTGACCTCGATGATG...................................................................................172.000.00-------2.00-----------------------------
...................................................................................................................................ATAGACGTGGTGAAGGATTGAG.................................................................................................2212.002.002.00------------------------------------
..............................................................................................................................................................................................................................ATGAGATTGTGCTGGATTTT........202.000.00------------2.00------------------------
......................................................................................................................................GACGTGGTGAAGGATTGAGTGA..............................................................................................2212.002.001.00-1.00----------------------------------
...................................................................................................................................ATAGACGTGGTGAAGGATT....................................................................................................1912.002.00-----1.00--1.00----------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTT...............................................................................................2312.00118.00--2.00----------------------------------
.....................................................................................................................................AGACGTGGTGAAGGATTGAGTGT..............................................................................................2312.0013.00---2.00---------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTA...............................................................................................2312.00118.00--2.00----------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTGAA.............................................................................................2512.0060.002.00------------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGGGTG...............................................................................................2311.005.00-1.00-----------------------------------
..........................................................................TGAGGCAGCAGAGTCTATAGT...........................................................................................................................................................211.000.00----------------------------1.00--------
..............................................................................................................................................................TCGATGATATGGGAAGTGAC........................................................................2011.001.001.00------------------------------------
.....................................................................................................................................................................................TCGGCTTTCTCCCGCCCAG..................................................1911.001.001.00------------------------------------
.....................................................................................................................................AGACGTGGTGAAGGATTGAGT................................................................................................2111.001.00--1.00----------------------------------
..........................................................................TGAGGCAGCAGAGTCTATGG............................................................................................................................................................201.000.00-----------1.00-------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGGGGG...............................................................................................2311.005.00-1.00-----------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGAA...............................................................................................2311.0024.00---------------------1.00---------------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGAG...............................................................................................2311.0024.00---1.00---------------------------------
...................................................................................................................................ATAGACGTGGTGAAGGATTGAGTGA..............................................................................................2511.001.001.00------------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATT....................................................................................................1811.001.00----------------------1.00--------------
..........................................................................TGAGGCAGCAGAGTCTACAGCT..........................................................................................................................................................221.000.00---------------1.00---------------------
..........................................................................TGAGGCAGCAGAGTCAAGA.............................................................................................................................................................191.000.00--------------------------1.00----------
....................................................................................................................................TAGACGTGGTGAAGGATTGAGGGA..............................................................................................2411.0024.00-1.00-----------------------------------
..............................................................................................................................................................................................TCCCGCCCAGTCCCTTGCCG........................................201.000.00-----------1.00-------------------------
..........................................................................TGAGGCAGCAGAGTCTATAG............................................................................................................................................................201.000.00-----------1.00-------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTTAGT................................................................................................2211.001.00----1.00--------------------------------
..........................................................................TGAGGCAGCAGAGTCTACAGTT..........................................................................................................................................................221.000.00-----------------------------1.00-------
.....................................................................................................................................AGACGTGGTGAAGGATTGAG.................................................................................................2011.001.00---1.00---------------------------------
....................................................................................................................................TAGACGTGGTGAAGGATTGACT................................................................................................2211.003.00--1.00----------------------------------
.....................................................................................................................................AGACGTGGTGAAGGATTGA..................................................................................................1911.001.00-----1.00-------------------------------
.........................................................................................TACAAGTAAATCATGATTT..............................................................................................................................................191.000.00-------------------------------1.00-----
....................................................................................................................................TAGACGTGGTGAAGGATTGAGTAA..............................................................................................2411.00118.00--------------------------------1.00----
....................................................................................................................................TAGACGTGGTGAAGGATTGAGAGT..............................................................................................2411.0024.001.00------------------------------------
...............................................................................................................................................................................................................................TGAGATTGTGCTGGATC..........171.000.00-----------------------1.00-------------
..........................................................................TGAGGCAGCAGAGTCTATAGC...........................................................................................................................................................211.000.00---------------1.00---------------------
..........................................................................TGAGGCAGCAGAGTCTACAGTCA.........................................................................................................................................................231.000.00----------------------------------1.00--
.................................................................................................................................................GGATTGAGTGACCTCTG........................................................................................171.000.00------------------1.00------------------
.....................................................................................................ATGAATCCAGTTGAAAATGTAATG.............................................................................................................................241.000.00---1.00---------------------------------
.......................................................................................................................................ACGTGGTGAAGGATTGAGTGA..............................................................................................2111.001.00------------------------1.00------------
..........................................................................TGAGGCAGCAGAGTCTACAGGT..........................................................................................................................................................221.000.00---------------------------1.00---------
...................................................................................................................................ATAGACGTGGTGAAGGATTTAGT................................................................................................2311.002.00--1.00----------------------------------
...................................................................................................................................ATAGACGTGGTGAAGGATTGAGTGACC............................................................................................2711.001.00-1.00-----------------------------------
.........................................................................................................................................................................................................CCCTTCGGCAGGTGAGG................................1711.001.00-----1.00-------------------------------
..............................................................................................................................................................................................................................ATGAGATTGTGCTGGATTA.........1930.330.33------------0.33------------------------

Antisense strand
AGGAGGTGAGCTTGGTGCTCCATTACTCTGAGGGTCCCCTTCTTCCTGGAGACAGGAGACTCTATAAGAATTTATGAGGCAGCAGAGTCTACAAGTAAATCATGAATCCAGTTGAAAATGTTAATGAGGCCATAGACGTGGTGAAGGATTGAGTGACCTCGATGATATGGGAAGTGACCACTCGGCTTTCTCCCGCCCAGTCCCTTCGGCAGGTGAGGCTGAATGAGATTGTGCTGGATTACTCCCGAGA
.........................................................................................................................................((((.(((((.(((((((((((((......))))..))...))))))))))))..))))......................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577589(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189784SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................................................................................................................CTCCCGCCCAGTCCCGAAG.......................................... 192.000.002.00------------------------------------
................................................................................................................................................................................................CCGCCCAGTCCCTTCCAT........................................ 181.000.00-----------------1.00-------------------
........................................................................................................................................................................................GCTTTCTCCCGCCCATGG................................................ 181.000.00---------------------------------1.00---
..........CTTGGTGCTCCATTA................................................................................................................................................................................................................................. 1550.200.20-----------------------------------0.20-
....................................................................................................................................................................................................CCAGTCCCTTCGGC........................................ 1460.170.17------------------------------------0.17