ID: hsa-mir-6830
GENE: P4HA2(12)
chr5:131553492-131553741-


(1)
AGO1.ip
(3)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(11)
BRAIN
(5)
BREAST
(13)
CELL-LINE
(3)
CERVIX
(9)
HEART
(4)
HELA
(1)
KIDNEY
(2)
LIVER
(3)
OTHER
(1)
OTHER.ip
(16)
SKIN
(1)
XRN.ip

Sense strand
CCTCTTTCTTCCTGAAGTTGCGAGATAGAGCCCCATGAGTGCCTAGGCCCCCTTTAACTCCAAGTCCCCATAATCCTCAGAGAGCTGACATGTTCTTATCCCAGGGGACTTGCTTCTGTGCTGGTATTCTGTGCCCCAAGGAAGGAGGCTGGACATCCCTCATCTGTTTCTCACTGGTGTCTTTCTTCTCTCCCTTGCAGGGCACATGACTGACCTGATTTATGCAGAGAAAGAGCTGGTGCAGTCTCTG
........................................................................................................................................(((((.((((((..(((((((..................)))))))..)))).)).))))).....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029125(GSM416754)
U2OS. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATC.............................................................................................22123.0023.003.003.00-2.001.00---2.001.002.00-1.002.002.00-------1.00-------------------------------1.001.00----------1.00---
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCAG..................................................23119.0019.00-1.002.00--2.001.00-1.00-------1.00------1.00---2.00------1.00--1.00----------1.00-------1.00--1.001.001.00---1.00----
.......................................................................................................................................CCAAGGAAGGAGGCTGGACAT..............................................................................................21118.0018.002.00--3.00--1.003.00---2.00-1.00----1.00-----------1.00---------1.00----------1.00------1.00---1.00-------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACAT..............................................................................................2218.008.00--1.00---1.00--1.001.00-1.00-1.00------1.00----1.00-------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACATC.............................................................................................2317.007.00-1.00---1.001.00----------2.001.00---1.00-----------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACA...............................................................................................2114.004.00-----------1.00---1.00-----1.00---1.00--------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCA...................................................2214.004.00----2.00-------------------1.00------1.00--------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGC....................................................2114.004.00--------1.00---------------------------1.00------1.001.00-------------------------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAGT.................................................2213.001.00-1.00---1.00---------------------------------1.00------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATCA............................................................................................2313.0023.001.00------------------1.00---1.00----------------------------------------------
.....................................................................................................................................CCCCAAGGAAGGAGGCTGGACA...............................................................................................2212.002.00------------------------1.00-------------1.00-------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATCT............................................................................................2312.0023.00---------1.00-------------------------------------------1.00----------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACATCA............................................................................................2412.007.001.00------------------------1.00--------------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACA...............................................................................................2012.002.00------------1.00--1.00------------------------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATT.............................................................................................2212.0018.00---------------1.001.00-----------------------------------------------------
..................................................................................................................................................................................................................TGACCTGATTTATGCAGACAA...................212.000.00--------------------2.00-------------------------------------------------
.....................................................................................................................................CCCCAAGGAAGGAGGCTGGACATC.............................................................................................2412.002.00----------------------------------------------1.00----------------1.00------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCAGT.................................................2411.0019.00--1.00-------------------------------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGTCAT..............................................................................................221.000.00----------------1.00-----------------------------------------------------
................................................................................................................................................................................................................ACTGACCTGATTTATGC.........................1711.001.00---------------------------------------------1.00------------------------
........................................................................................................................................CAAGGAAGGAGGCTGGACATA.............................................................................................211.000.00--------------------------------1.00-------------------------------------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAGTAG...............................................2411.001.00----------------------------------------------------------------1.00-----
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATAGA...........................................................................................2411.0018.00----1.00-----------------------------------------------------------------
..................................................................................................................................................GGCTGGACATCCCTCATCTGT...................................................................................2111.001.00-------------------------------------------------1.00--------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATA.............................................................................................2211.0018.00------------------------------------------1.00---------------------------
...........................................................................................................................................................................................................ACATGACTGACCTGATTTATGCAGAGAAAG.................3011.001.00-------------------1.00--------------------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACAA..............................................................................................2111.002.001.00---------------------------------------------------------------------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAG..................................................2111.001.00--1.00-------------------------------------------------------------------
..........CCTGAAGTTGCGAGATAGAGC...........................................................................................................................................................................................................................2111.001.00-----------------------------------------------1.00----------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACACA.............................................................................................2211.002.00--------------------------1.00-------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTACA...................................................221.000.00-----------------------------------------1.00----------------------------
..........................................................................................................................................................................................................CACATGACTGACCTGATTTATGCAGA......................2611.001.00-------1.00--------------------------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCGCAG....................................................211.000.00---------------------------------1.00------------------------------------
..............................................................................................................................................................................................................TGACTGACCTGATTTATGCAGAGAAAGAGCTGGT..........3411.001.00-----------------------------1.00----------------------------------------
.......................................................................................................................................................................................................GGGCACATGACTGACCTGATTTATGCAGAGAA...................3211.001.00----------------------------------------------------1.00-----------------
.........................................................................................................................................AAGGAAGGAGGCTGGACTTAC............................................................................................211.000.00----------------------------1.00-----------------------------------------
........................................................................................................................................CAAGGAAGGAGGCTGGACA...............................................................................................1920.500.50----------------------------0.50-----------------------------------------
.........................................................................................................................................AAGGAAGGAGGCTGGACAT..............................................................................................1930.330.33-------------------------------------------------------------------0.33--
...................................................................................................................CTGTGCTGGTATTCT........................................................................................................................1560.170.17--------------------------------------------------------------------0.17-
.................................CATGAGTGCCTAGG...........................................................................................................................................................................................................1490.110.11---------------------------------------------------------------------0.11

Antisense strand
CCTCTTTCTTCCTGAAGTTGCGAGATAGAGCCCCATGAGTGCCTAGGCCCCCTTTAACTCCAAGTCCCCATAATCCTCAGAGAGCTGACATGTTCTTATCCCAGGGGACTTGCTTCTGTGCTGGTATTCTGTGCCCCAAGGAAGGAGGCTGGACATCCCTCATCTGTTTCTCACTGGTGTCTTTCTTCTCTCCCTTGCAGGGCACATGACTGACCTGATTTATGCAGAGAAAGAGCTGGTGCAGTCTCTG
........................................................................................................................................(((((.((((((..(((((((..................)))))))..)))).)).))))).....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029125(GSM416754)
U2OS. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................................GACCTGATTTATGCATACA.................... 191.000.00---------------------------------------------------------1.00------------
.................................................................CCCCATAATCCTCAGATAGG..................................................................................................................................................................... 201.000.00--------------------------------------------------1.00-------------------
.............................................................................................................................................................................CTGGTGTCTTTCTTCAGCA.......................................................... 191.000.00-----------------------------------1.00----------------------------------