ID: hsa-mir-6828
GENE: CLDN11
chr3:170140751-170141000+


(1)
AGO2.ip 		(9)
BRAIN 		(8)
BREAST 		(7)
CELL-LINE 		(2)
HEART 		(2)
LIVER 		(3)
OTHER 		(17)
SKIN

Sense strand
TCTCCAGCCCCCTTTTTTCTTGCTGAGTTGTTTTAAAAGTTAAAAAGTGCTTAGTGACCTTGGACAACATTAGCACCTTCTAAGTCCTGGAATCCACCAAGAAGGAGGAAGGGAGATGGTGCTGAATTCCCCTAAGGCAGGGCTCAGGAAGCAAGAGAACCCTGTGGTCTAACCTTTCCCATCTGCTCTCTTGTTCCCAGGCTACGTGCAGGCCTGCCGCGCCCTGATGATTGCTGCCTCGGTCCTGGGT
..................................................................................................................................................((.(((((((((.....((((...........))))....))))))))).))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189785SRR029129(GSM416758)
SW480. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR343335TAX577590(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGG...................................................................................22130.0030.006.002.003.001.00-1.001.00---1.00---2.00-1.002.00---1.00-1.00-1.00-1.00---1.00----1.00----1.00----1.00-1.00--1.00-
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGT.....................................................................................22110.0010.002.003.002.001.00-1.00-------------------------------------------1.00---
.................................................................................................................................................AGGAAGCAAGAGAACCCTGT.....................................................................................2017.007.002.002.001.00-1.00---------------------1.00--------------------------
....................................................................................................................................................................................ATCTGCTCTCTTGTTCCCAGT.................................................215.000.00--2.00-------1.00-------1.00----------------------------1.00-----
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGA..................................................................................2314.0030.00-1.00----------1.00------------------------1.00-1.00-------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCT.......................................................................................2014.004.00-2.00--1.00----1.00-------------------------------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGTGG...................................................................................2414.004.001.001.00-1.00------------------1.00------------------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGTG....................................................................................2313.003.00----1.00-1.00---------------------------------1.00------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTG....................................................................................2112.002.00---------1.00------------------------1.00------------------
...................................................................................................................................................................................CATCTGCTCTCTTGTTCCCAGT.................................................222.000.00-----------------------------1.00-------------1.00---------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGA...................................................................................2212.002.00------1.00-----1.00----------------------------------------
....................................................................................................................................................................................ATCTGCTCTCTTGTTCCCAGTA................................................222.000.00----------------1.00---------------1.00--------------------
.......................................................................................................................................................................................................................GCCGCGCCCTGATGATTGCTGCCTCGGTCCT....3111.001.00-------1.00---------------------------------------------
................................................................................................................................................CAGGAAGCAAGAGAACCC........................................................................................1811.001.00--1.00--------------------------------------------------
..........................................AAAAGTGCTTAGTGACCTTG............................................................................................................................................................................................2011.001.00---1.00-------------------------------------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTAA.....................................................................................2211.004.00-1.00---------------------------------------------------
.....................................................................................................................................................................................................................................ATTGCTGCCTCGGTCTGA...181.000.00------------------------------------------1.00----------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGTGT................................................................................251.000.00--------------------1.00--------------------------------
.............................................................................................................AGGGAGATGGTGCTGAC............................................................................................................................171.000.00----------------------------1.00------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGAA.................................................................................2411.0030.00---1.00-------------------------------------------------
..............................................................................................................................................CTCAGGAAGCAAGAGAACCCTG......................................................................................2211.001.001.00----------------------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGTTTA...............................................................................261.000.00--------------------------------------------------1.00--
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGA.....................................................................................221.000.00------------------------------1.00----------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGTCT................................................................................2511.001.00---1.00-------------------------------------------------
...........................................................................................................................................GGGCTCAGGAAGCAATAG.............................................................................................181.000.00-------1.00---------------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGAA..................................................................................2311.002.001.00----------------------------------------------------
................................................................................................................................................CAGGAAGCAAGAGAACCCTGTG....................................................................................2211.001.00--1.00--------------------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCG........................................................................................171.000.00-------------1.00---------------------------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGTGA...................................................................................2411.003.00-----1.00-----------------------------------------------
................................................................................................................................................CAGGAAGCAAGAGAACCCTGTGG...................................................................................2311.001.001.00----------------------------------------------------
....................................................................................................................................................................................ATCTGCTCTCTTGTTCCCAGTT................................................221.000.00----1.00------------------------------------------------
........................................................................................................................................................................CTAACCTTTCCCATCACAG...............................................................191.000.00--------1.00--------------------------------------------
...................................................................................................AGAAGGAGGAAGGGAGGCG....................................................................................................................................191.000.00---------------------------------------------1.00-------
....................................................................................................................................................................................ATCTGCTCTCTTGTTCCCAGTAT...............................................231.000.00---------------1.00-------------------------------------
...................TTGCTGAGTTGTTTTAACAA...................................................................................................................................................................................................................201.000.00---------------------------------1.00-------------------

Antisense strand
TCTCCAGCCCCCTTTTTTCTTGCTGAGTTGTTTTAAAAGTTAAAAAGTGCTTAGTGACCTTGGACAACATTAGCACCTTCTAAGTCCTGGAATCCACCAAGAAGGAGGAAGGGAGATGGTGCTGAATTCCCCTAAGGCAGGGCTCAGGAAGCAAGAGAACCCTGTGGTCTAACCTTTCCCATCTGCTCTCTTGTTCCCAGGCTACGTGCAGGCCTGCCGCGCCCTGATGATTGCTGCCTCGGTCCTGGGT
..................................................................................................................................................((.(((((((((.....((((...........))))....))))))))).))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189785SRR029129(GSM416758)
SW480. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR343335TAX577590(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)
.......................................................................................................................................................................................................................................TGCTGCCTCGGTCCTGTT. 181.000.00---------------1.00-------------------------------------
...........................................................................................................GAAGGGAGATGGTGCTCTT............................................................................................................................ 191.000.00-----------------------------------1.00-----------------
....................................................................................................................................................AAGCAAGAGAACCCTGTAT................................................................................... 191.000.00-------------------1.00---------------------------------
..........................................AAAAGTGCTTAGTGAACG.............................................................................................................................................................................................. 181.000.00--------1.00--------------------------------------------
............................................................................CTTCTAAGTCCTGGAATCTG.......................................................................................................................................................... 201.000.00--------------------------------------1.00--------------
.................................................................................AAGTCCTGGAATCCACCAATTT................................................................................................................................................... 221.000.00----------------------------------------------------1.00
...........................................................................................................GAAGGGAGATGGTGCTCT............................................................................................................................. 181.000.00------------------------1.00----------------------------
.............................................................................................................................................................................CTTTCCCATCTGCTCTTTG.......................................................... 191.000.00-----------1.00-----------------------------------------
...................................................................................................................................................................................CATCTGCTCTCTTGTCTGG.................................................... 191.000.00-----------1.00-----------------------------------------
...................................................................................GTCCTGGAATCCACCAACATG.................................................................................................................................................. 211.000.00-------------1.00---------------------------------------
....................................................................................................................................................................................................CCAGGCTACGTGCAGAGGT................................... 191.000.00--------------------------------------------1.00--------
........................................................................................................................................................................................................................................GCTGCCTCGGTCCTGGG. 1730.330.33------------------0.33----------------------------------
.....................................................................................................AAGGAGGAAGGGAGATG.................................................................................................................................... 1770.140.14-------------------0.14---------------------------------