ID: hsa-mir-6784
GENE: PLCD3(4)
chr17:43191685-43191934-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(4)
BRAIN 		(10)
BREAST 		(15)
CELL-LINE 		(1)
CERVIX 		(2)
FIBROBLAST 		(8)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(12)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGGCCAGGCTGTGTGGCTGGAGGGGGTCCCTGCAGCCTCCTCAGTGAGCTCCCCTCTCACTCTAGGTCAGAAGAGAGTGAGGAGCGGGGGCAGGGTGACCTGGGGACGGGCTTGGGCTCTGTTCCCTGGAGGTTACAGGCCGGGGCTTTGGGTGAGGGACCCCCGGAGTCTGTCACGGTCTCACCCCAACTCTGCCCCAGGGAACAGCTTTGTCAGGCACAATGCCCGCCAGCTGACCCGCGTGTACCCG
.............................................................................................................................................(((((...((((((((.....(((((.....)).))))))))))).......)))))....................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189784SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR038863(GSM458546)
MM603. (cell line)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191513(GSM715623)
164genomic small RNA (size selected RNA from . (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189785SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR029131(GSM416760)
MCF7. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAGT.................................................23135.006.003.006.004.003.001.00-2.002.00----1.00-1.00--2.00--1.00----------1.00-1.00-------1.00---1.00---1.00----1.00-1.001.00-1.00----
.................................................................................................................................................................................GTCTCACCCCAACTCTGCCCCAG..................................................23114.0014.004.00---1.00---3.001.00--1.00--1.00----------1.00-1.00--------------------------------1.00--
.................................................................................................................................................................................GTCTCACCCCAACTCTGCCCCAGT.................................................24110.0014.00----2.004.00----------------1.00---------------1.00------------1.00------1.00-----
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAGA.................................................2318.006.001.002.00-1.00-----1.00-1.00--1.00--------------------1.00----------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAG..................................................2216.006.001.00--1.00---1.00----------------1.001.00------------------------------------1.00-
..........................................................................................................................................GCCGGGGCTTTGGGTGAGGG............................................................................................2016.006.006.00---------------------------------------------------------------
...........................................................................................................................................CCGGGGCTTTGGGTGAGG.............................................................................................1815.005.004.00-----------------------------------------------------------1.00---
............................................................................................................................................CGGGGCTTTGGGTGAGGGAC..........................................................................................2014.004.004.00---------------------------------------------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAAT.................................................2314.001.00--3.00-----------------------------1.00-------------------------------
...........................................................................................................................................CCGGGGCTTTGGGTGAGGGACC.........................................................................................2213.003.001.00------------------1.00----------1.00---------------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAGC.................................................2313.006.002.00--------------1.00------------------------------------------------
...........................................................................................................................................CCGGGGCTTTGGGTGAGGGAC..........................................................................................2113.003.00------2.00------------------------------------1.00--------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAGTT................................................2412.006.00---1.00--------------------------------------------1.00---------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAGAT................................................2412.006.00-1.00--------1.00-----------------------------------------------------
............................................................................................................................................CGGGGCTTTGGGTGAGGG............................................................................................1812.002.002.00---------------------------------------------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAAAA................................................2411.001.00--1.00-------------------------------------------------------------
...................................................................................................................................................................................CTCACCCCAACTCTGCCCCAGT.................................................221.000.00---1.00------------------------------------------------------------
..............................................................................................................CTTGGGCTCTGTTCCCTGGAGGTTACAGGCCGGG..........................................................................................................3411.001.00--------------------------------------------1.00-------------------
.....................................................................................................................................................................................................CAGGGAACAGCTTTGTCAG..................................1911.001.00------------------------------------1.00---------------------------
...........................................................................................................................................CCGGGGCTTTGGGTGAGGG............................................................................................1911.001.00----------------------------------------------1.00-----------------
............................................................................................................................................CGGGGCTTTGGGTGAGTGAC..........................................................................................201.000.001.00---------------------------------------------------------------
.................................................................................................................................................................................GTCTCACCCCAACTCTGCCCCAT..................................................231.000.001.00---------------------------------------------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCA...................................................2111.001.00------------------------------------------1.00---------------------
................................................................................................................................GAGGTTACAGGCCGGGATC.......................................................................................................191.000.00-------------1.00--------------------------------------------------
...........TGTGGCTGGAGGGGGCTTG............................................................................................................................................................................................................................191.000.00-----------1.00----------------------------------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCC...................................................211.000.00----------------1.00-----------------------------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCATT.................................................2311.001.00----------------------------------------1.00-----------------------
...........................................................................................................................................CCGGGGCTTTGGGTGAGGGACA.........................................................................................2211.003.00----------1.00-----------------------------------------------------
...........................................................................................AGGGTGACCTGGGGAAGGC............................................................................................................................................191.000.00----------------------------------------------------1.00-----------
............................................................................................................................................CGGGGCTTTGGGTGAGGGACCC........................................................................................2211.001.00---------------------------------------1.00------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAAA.................................................2311.001.00----------------------------------1.00-----------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCACC.................................................2311.001.00-------------------1.00--------------------------------------------
...................................................................................................................................................................CGGAGTCTGTCACGG........................................................................1511.001.00----1.00-----------------------------------------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAA..................................................2211.001.00---------------------------1.00------------------------------------
..GCCAGGCTGTGTGGCTGGAGG...................................................................................................................................................................................................................................2111.001.00---------------------1.00------------------------------------------
..................................................................................................................................................................................TCTCACCCCAACTCTGCCCCAATA................................................2411.001.00----------------1.00-----------------------------------------------
...........................................................................................................................................CCGGGGCTTTGGGTGAGGGACCCA.......................................................................................241.000.00------------------1.00---------------------------------------------
.....................................................................................................GGGGACGGGCTTGGGAGAG..................................................................................................................................191.000.00-------------------------------------1.00--------------------------
...............................................................................................................................GGAGGTTACAGGCCGGGTGGC......................................................................................................211.000.00-------------1.00--------------------------------------------------
............................................................................................................................................CGGGGCTTTGGGTGAGG.............................................................................................1711.001.00-----------------------------------------------1.00----------------
.............................................................................................................................................GGGGCTTTGGGTGAGG.............................................................................................1650.200.20---------------------------------------------------------------0.20

Antisense strand
GGGCCAGGCTGTGTGGCTGGAGGGGGTCCCTGCAGCCTCCTCAGTGAGCTCCCCTCTCACTCTAGGTCAGAAGAGAGTGAGGAGCGGGGGCAGGGTGACCTGGGGACGGGCTTGGGCTCTGTTCCCTGGAGGTTACAGGCCGGGGCTTTGGGTGAGGGACCCCCGGAGTCTGTCACGGTCTCACCCCAACTCTGCCCCAGGGAACAGCTTTGTCAGGCACAATGCCCGCCAGCTGACCCGCGTGTACCCG
.............................................................................................................................................(((((...((((((((.....(((((.....)).))))))))))).......)))))....................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189784SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR038863(GSM458546)
MM603. (cell line)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191513(GSM715623)
164genomic small RNA (size selected RNA from . (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189785SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR029131(GSM416760)
MCF7. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
......................................................................................................................................ACAGGCCGGGGCTTTG.................................................................................................... 1611.001.00-------------------------------------------------------1.00--------
..............................................................................................................CTTGGGCTCTGTTCCAGAC......................................................................................................................... 191.000.00-----------------------------1.00----------------------------------
...............................................................................AGGAGCGGGGGCAGGGTC......................................................................................................................................................... 181.000.00-----------------------1.00----------------------------------------
.....AGGCTGTGTGGCTGGAGCAGT................................................................................................................................................................................................................................ 211.000.00--------------------------------------------------1.00-------------
.........................GTCCCTGCAGCCTCCGACT.............................................................................................................................................................................................................. 191.000.00-----------------------------------------------------1.00----------
.....AGGCTGTGTGGCTGGAGCAGC................................................................................................................................................................................................................................ 211.000.00------------------1.00---------------------------------------------