ID: hsa-mir-6727
GENE: CPSF3L(3)
chr1:1247832-1248022-


(2)
AGO1.ip 		(4)
AGO2.ip 		(1)
AGO3.ip 		(23)
B-CELL 		(5)
BRAIN 		(16)
BREAST 		(41)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(4)
HELA 		(5)
LIVER 		(4)
OTHER 		(33)
SKIN 		(1)
XRN.ip

Sense strand
CATCCCCGTAGGCATCTCGCTGGGGCTGCTGAAGCGGGAGATGGCGCAGGGTATGCGGGCTGGGCAGGGCAGGGCAGGGTGCTCGGGGCAGGCGGCTGGGAGCGGCCCTCACATTGATGGCTCCTGCCACCTCCTCCGCAGGGCTGCTCCCTGAGGCCAAGAAGCCTCGGCTCCTGCACGGCACCCTGATC
...............................................................................(((..((((.(((.(((.((((...(((.((.....)).)))))))))).))))))).)))...................................................
............................................................................77..............................................................141................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189786DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR189782SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		TAX577740(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038862(GSM458545)
MM472. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191534(GSM715644)
153genomic small RNA (size selected RNA from . (breast)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM532888(GSM532888)
G761T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
.................................................................................CTCGGGGCAGGCGGCTGGGAGC........................................................................................22121.0021.004.00-----------2.00-1.00-4.00-------------------------1.00-----------2.00------1.001.00------------------1.00-1.00---------------------1.00------1.00----------------------------1.00-
.................................................................................CTCGGGGCAGGCGGCTGGGAGCG.......................................................................................23120.0020.001.00-1.00--2.00--1.00-3.00---------1.00-1.00---1.00----------1.00---------------1.00-1.00---------1.00-1.00--------------1.00---1.00------1.00-------------1.00-----------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGT......................................................................................24120.0020.002.00----1.00--2.00--1.001.002.00-2.00---2.00-----1.00----1.00----------1.00--1.00------------1.00-----------------------------------------------------1.00--------1.00----------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAGT.................................................21119.003.00---3.00-------------1.00------2.00------3.00------------------1.00-------------------1.001.00--------------------1.00--1.001.00----1.00---------------1.00---1.00-----------1.00---------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGA......................................................................................24113.0020.001.003.00---1.00-----1.00---------2.00-1.00-----1.00--------------------------------1.00--------------------------------------------------------------1.00---------1.00-------
.................................................................................CTCGGGGCAGGCGGCTGGGAG.........................................................................................21112.0012.00-1.00----------------2.002.00--------------------1.00--1.00------------1.00----------------------1.00------------------------------1.00-------1.00-------1.00----------------
.................................................................................CTCGGGGCAGGCGGCTGGGAA.........................................................................................2117.004.00--------1.001.00--1.00-----1.00--------1.00--------2.00----------------------------------------------------------------------------------------------------------
........................................................................................................................CTCCTGCCACCTCCTCCGCAGT.................................................226.000.001.00-----------------------------------------1.00-----------------------------1.00------------------1.00----------------------------------------------1.001.00---
............CATCTCGCTGGGGCTTCCA................................................................................................................................................................196.000.00-----------1.00----------------------------1.00-----------------1.00----1.00---------1.00-------------------------------------------------1.00-------------------
................................................................................GCTCGGGGCAGGCGGCTGGGAGC........................................................................................2315.005.001.00----------------------------------1.00---------1.00---------1.00-----1.00---------------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCACC.................................................2114.002.00---4.00-------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGA..........................................................................................2014.004.00------------------1.00--------1.00--1.00---------------------------------1.00------------------------------------------------------------------------------
............CATCTCGCTGGGGCTTC..................................................................................................................................................................173.000.00--------------------------------2.00-1.00------------------------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGAGC........................................................................................2113.003.00-2.00---------------------------1.00-----------------------------------------------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAG..................................................2013.003.00-----------------1.00-------------------------------1.00-----------------------------------------------------------------1.00---------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGT........................................................................................2213.0012.00-1.002.00--------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGG......................................................................................2413.003.00---------------------------1.00----------------------------1.00-------------------------------------------------------------------------------1.00------
.................................................................................CTCGGGGCAGGCGGCTGGGGGC........................................................................................2213.001.001.00-------------------1.00--1.00-----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAGA.................................................2113.003.00-1.00-------------------------------------------------1.00----------------------------------------------1.00--------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCA.......................................................................................2313.0021.00----------2.001.00-----------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGTT.....................................................................................2513.0020.00-1.00------------------1.00-------------------------------------1.00------------------------------------------------------------------------------------
...............................................................................TGCTCGGGGCAGGCGGCTGGGAGCGT......................................................................................262.000.00-------------1.00-1.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGA........................................................................................2212.0012.002.00----------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGAT.....................................................................................2512.0020.00--1.00----------------------------------------------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................GCCACCTCCTCCGCAGT.................................................172.000.00----------------------------------------------2.00------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAAA........................................................................................2212.004.00-------1.00----------------1.00----------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGG............................................................................................1812.002.00------------------------------1.00------------------------------------------------------------------------------------------------1.00---------------
................................................................................GCTCGGGGCAGGCGGCTGGGAGCGT......................................................................................2512.001.00-----1.00-----------------------------------------1.00-----------------------------------------------------------------------------------------------
......................................................................................GGCAGGCGGCTGGGAGCGA......................................................................................192.000.00----------------------2.00------------------------------------------------------------------------------------------------------------------------
.............ATCTCGCTGGGGCTGCCA................................................................................................................................................................182.000.00----------------------------1.00------------------------------1.00-----------------------------------------------------------------------------------
........................................................................................................................CTCCTGCCACCTCCTCCGCATA.................................................222.000.00------------------------------------------------------------------------------------1.00-------------------------------------------------------1.00--
.................................................................................CTCGGGGCAGGCGGCTGGGGGCG.......................................................................................2312.001.00--2.00--------------------------------------------------------------------------------------------------------------------------------------------
................................................................................GCTCGGGGCAGGCGGCTGGGAGA........................................................................................232.000.00-------------1.00-1.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................AAGCCTCGGCTCCTGCACGGCACCCTGAC.292.000.00----1.00---------------------------------1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................CCCTGAGGCCAAGAAGCCTCGGCTCCTGCACGGCA........3512.002.00--------------------------------------------------------------------------------------------------------1.00-------------------------1.00------------
.................................................................................................................................................................AAGCCTCGGCTCCTGCACGGCACCCCG...272.000.00----2.00------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCA...................................................1912.002.00---------------------------------------2.00-------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGGG.........................................................................................2111.001.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAGTA................................................2211.003.00----------------------------------------------------------------------------------------------1.00------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGTTA....................................................................................2611.0020.00-------------------------------------1.00---------------------------------------------------------------------------------------------------------
.............ATCTCGCTGGGGCTGCAA................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------1.00------------------------------------------
............CATCTCGCTGGGGCTTTCA................................................................................................................................................................191.000.00----------------------------------1.00------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGG...........................................................................................1911.001.00------1.00----------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGCGAG.........................................................................................211.000.00--------------------------------------------1.00--------------------------------------------------------------------------------------------------
.........................................................................................AGGCGGCTGGGAGCGGCCCTCACCTTG...........................................................................271.000.00-----------------------------------------------------------1.00-----------------------------------------------------------------------------------
................................................................................GCTCGGGGCAGGCGGCTGGGAGCG.......................................................................................2411.001.00----------------------------1.00------------------------------------------------------------------------------------------------------------------
..........................................................................................................................CCTGCCACCTCCTCCGCCTC.................................................201.000.00------------------------------------------------------------------1.00----------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCACT.................................................2111.002.00------------------------------------------------------------------------------1.00----------------------------------------------------------------
........................................................................................................................CTCCTGCCACCTCCTCCGCCGTT................................................2311.001.00--------------------------------------------------------------------------1.00--------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGGGC........................................................................................211.000.00------------------------------------------------------------1.00----------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAAAG.......................................................................................2311.004.00-------------------------------------------1.00---------------------------------------------------------------------------------------------------
....................TGGGGCTGCTGAAGCGGGAGA......................................................................................................................................................2111.001.00---------------------------------------------------------1.00-------------------------------------------------------------------------------------
...............................................................................TGCTCGGGGCAGGCGGCTG.............................................................................................1911.001.00---------------------------------------------------------------------------------------------------------------------------------1.00-------------
........................................................................................................................CTCCTGCCACCTCCTCCGCAGTT................................................231.000.00------------------------------------------------------------1.00----------------------------------------------------------------------------------
........................................................................................................................CTCCTGCCACCTCCTCCGCAGTA................................................231.000.00-----------------------------------------------------------------------------------------------------------------------1.00-----------------------
........................................................................................................................CTCCTGCCACCTCCTCCGCTTT.................................................2211.001.00---------------------------------------------------1.00-------------------------------------------------------------------------------------------
............CATCTCGCTGGGGCTTA..................................................................................................................................................................171.000.00------------------------------------------------1.00----------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGAT.........................................................................................201.000.00-----------------------------1.00-----------------------------------------------------------------------------------------------------------------
.....................GGGGCTGCTGAAGCGGGAGATGGCGCAGG.............................................................................................................................................2911.001.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------
..............TCTCGCTGGGGCTGCTGAAGCGG..........................................................................................................................................................2311.001.00----------------------------------------------------1.00------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGAGCG.......................................................................................2211.001.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCAAA.....................................................................................2511.0021.00-------------------------------------------------------------------------------------------------------------1.00---------------------------------
......................GGGCTGCTGAAGCGGGAGA......................................................................................................................................................1911.001.00--------------1.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGGGGG.......................................................................................2311.001.00----------------------------------------------------------------------------------------------------------1.00------------------------------------
..............................................................................GTGCTCGGGGCAGGCGGCTGGGAGC........................................................................................2511.001.00-----------------------------------------1.00-----------------------------------------------------------------------------------------------------
...........................................................CTGGGCAGGGCAGGGCAGGGAA..............................................................................................................221.000.00---------------------1.00-------------------------------------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGAGCCT......................................................................................2311.003.00-------------------------1.00---------------------------------------------------------------------------------------------------------------------
....................TGGGGCTGCTGAAGCGGGAGATGG...................................................................................................................................................2411.001.00------------------------------------------------------------------------------------------1.00----------------------------------------------------
..............................GAAGCGGGAGATGGCGTACG.............................................................................................................................................201.000.00--------------------------------------------------------------------------------------------------------------------------1.00--------------------
....................TGGGGCTGCTGAAGCGGGA........................................................................................................................................................1911.001.00-----------------------1.00-----------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGGTAT...................................................................................2711.003.00--1.00--------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCTAG.....................................................................................2511.0021.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGGGA........................................................................................211.000.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................CTCCTGCCACCTCCTCCCAG...................................................201.000.00------------------------------------------------------------------------------------------------------------------------------------1.00----------
......................................................................................................................................................................TCGGCTCCTGCACGGG.........161.000.00---------------------------------------------------------------------1.00-------------------------------------------------------------------------
...............................................................................TGCTCGGGGCAGGCGGCTGGGAGCAT......................................................................................261.000.00------------------------------------------------------------------------------------------------------------1.00----------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGGA.....................................................................................2511.003.00--1.00--------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGAGCGTAG....................................................................................2511.001.00----------------------------1.00------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGA...........................................................................................1911.002.00--------------------------1.00--------------------------------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGAA.........................................................................................201.000.00-----------------------------------------------------------------------------1.00-----------------------------------------------------------------
................................................................................GCTCGGGGCAGGCGGCTGGGAA.........................................................................................221.000.00---------1.00-------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAGTAT...............................................2311.003.00-----------------------------------------------------------------------------------------------------------------------------------1.00-----------
......................GGGCTGCTGAAGCGG..........................................................................................................................................................1511.001.00-----------------------------------------------1.00-----------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGCT.....................................................................................2511.0020.00------1.00----------------------------------------------------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGAGCGT......................................................................................2311.001.00-----1.00-----------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGGAAG.......................................................................................2311.001.00---------------------------------1.00-------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGTAA..........................................................................................201.000.00----------------------------------------------------------------------------------------------------------------------------1.00------------------
..................................................................................TCGGGGCAGGCGGCTGGGGAT........................................................................................211.000.00---------------------------------------------------------------------------1.00-------------------------------------------------------------------
...................................................................................CGGGGCAGGCGGCTGGA...........................................................................................171.000.00-----------------------------------------------------------------------------------------------------------------------------------------1.00-----
...............................................................................TGCTCGGGGCAGGCGGCTGGGAGCC.......................................................................................251.000.00---------------------------------------------1.00-------------------------------------------------------------------------------------------------
..................................................................................TCGGGGCAGGCGGCTGGGAGCGA......................................................................................2311.001.00--------1.00--------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................CTCCTGCCACCTCCTCCGCATT.................................................221.000.00---------------------------------1.00-------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGGGA........................................................................................2211.001.00--------------------------1.00--------------------------------------------------------------------------------------------------------------------
........................................................................................................................CTCCTGCCACCTCCTCCGCAGA.................................................221.000.00----------------------------------------------------------------------------1.00------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAGAA................................................2211.003.00--------------------------------------------------------------------------------1.00--------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGAAG..........................................................................................201.000.00-----------------------------------------------------------------------------------------------------------------1.00-----------------------------
..............TCTCGCTGGGGCTGCTGAAGCGGG.........................................................................................................................................................2411.001.00----------------------------------------------------1.00------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCAT......................................................................................2411.0021.00--------------------------------------------------1.00--------------------------------------------------------------------------------------------
......................................................GCGGGCTGGGCAGGGCAGGG.....................................................................................................................2011.001.00-----------------------------------1.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAGAAT...............................................2311.003.00---------------------------------------------------------------------------------------------------1.00-------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGAAA..........................................................................................201.000.00-------------------------------------------------------------------------------------------------------1.00---------------------------------------
...................................................................................CGGGGCAGGCGGCTGGATAA........................................................................................201.000.00-----------------1.00-----------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCAGC............................................................................................181.000.00--------------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................GCTCGGGGCAGGCGGCTGGGGGTT.......................................................................................241.000.00------------------------------------------------------------------------------------------------------------------1.00----------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAAAA.......................................................................................2311.004.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCACC.....................................................................................2511.0021.00------1.00----------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGGGT......................................................................................2411.0012.00---------1.00-------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGT............................................................................................181.000.00-------------------------1.00---------------------------------------------------------------------------------------------------------------------
................................................................................GCTCGGGGCAGGCGGCTGGGAGCA.......................................................................................2411.005.00--------------------------------------------------------------------1.00--------------------------------------------------------------------------
............................................................................................CGGCTGGGAGCGGCCCTCGG...............................................................................201.000.00------------------------------------------------------------------------------------------------------1.00----------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAAT.................................................2111.002.001.00----------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................CCTGCCACCTCCTCCGCAGA.................................................201.000.00-----------------------------------------------------------------------------------------1.00-----------------------------------------------------
........................................................................................................................CTCCTGCCACCTCCTCCGCAGTTT...............................................241.000.00-------------------------------------------------------------------------------------1.00---------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGTCAT.....................................................................................2511.0012.00----------------------------------------------------------------------------------------1.00------------------------------------------------------
............CATCTCGCTGGGGCTTGC.................................................................................................................................................................181.000.00------------------------------------------------1.00----------------------------------------------------------------------------------------------
.........................................................................................................................TCCTGCCACCTCCTCCGCAGAAA...............................................2311.003.00-----------------------------------------------------1.00-----------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGGA.........................................................................................2111.001.00---------1.00-------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CTCGGGGCAGGCGGCTGGGAGCGGC.....................................................................................2511.001.00--------------------------------------------------------------------------------------------------------------------------------------1.00--------
........................................................................................................................CTCCTGCCACCTCCTCCGC....................................................1911.001.00--------------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................GCTCGGGGCAGGCGGCTGGGAGT........................................................................................231.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------
................................................................................GCTCGGGGCAGGCGGCTGGGAGG........................................................................................231.000.00---------1.00-------------------------------------------------------------------------------------------------------------------------------------
...CCCCGTAGGCATC...............................................................................................................................................................................13100.800.80----------------------------------------------------------------------------------------------------------------------------------------------0.80
.....................................................................................GGGCAGGCGGCTGGGAGCG.......................................................................................1920.500.50---------------------0.50-------------------------------------------------------------------------------------------------------------------------
....................................................ATGCGGGCTGGGCAGGG..........................................................................................................................1720.500.50---------------------------------------------------------------0.50-------------------------------------------------------------------------------

Antisense strand
CATCCCCGTAGGCATCTCGCTGGGGCTGCTGAAGCGGGAGATGGCGCAGGGTATGCGGGCTGGGCAGGGCAGGGCAGGGTGCTCGGGGCAGGCGGCTGGGAGCGGCCCTCACATTGATGGCTCCTGCCACCTCCTCCGCAGGGCTGCTCCCTGAGGCCAAGAAGCCTCGGCTCCTGCACGGCACCCTGATC
...............................................................................(((..((((.(((.(((.((((...(((.((.....)).)))))))))).))))))).)))...................................................
............................................................................77..............................................................141................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189786DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR189782SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		TAX577740(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038862(GSM458545)
MM472. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191534(GSM715644)
153genomic small RNA (size selected RNA from . (breast)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM532888(GSM532888)
G761T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
.......................................................................................................................GCTCCTGCCACCTCCTCCGCAAA................................................. 233.000.003.00----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGCCTCGGCTCCTGCACGGCACCCTGATCC 302.000.00----2.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GCCTCGGCTCCTGCACGGCACCCTGATC 282.000.00----1.00---------------------------------1.00--------------------------------------------------------------------------------------------------------
....................................................................................GGGGCAGGCGGCTGGCTCT........................................................................................ 191.000.00------1.00----------------------------------------------------------------------------------------------------------------------------------------
..............................................................................GTGCTCGGGGCAGGCGGAGGC............................................................................................ 211.000.00------1.00----------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................CCTCCGCAGGGCTGCTC.......................................... 1711.001.00---------------------------------------------------------------------------------------1.00-------------------------------------------------------
..........GGCATCTCGCTGGGGCGG................................................................................................................................................................... 181.000.00--------------------------------------------------------------------------------------------------------------------1.00--------------------------
...........................................................................................................................CTGCCACCTCCTCCGAGT.................................................. 181.000.00--------------------------------------------------------------------------------------------------------------------------------1.00--------------
............................................................................GGGTGCTCGGGGCAGCTTA................................................................................................ 191.000.00-----------------1.00-----------------------------------------------------------------------------------------------------------------------------