ID: hsa-mir-4641
GENE: FOXP4(15)
chr6:41566327-41566576+


(2)
B-CELL 		(1)
BRAIN 		(17)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(1)
KIDNEY 		(6)
LIVER 		(2)
OTHER 		(8)
SKIN

Sense strand
CCCAGAGCAGTCTCTGCCCCAGGACCAGCTTTTCTTTGAAGAGAGCCCTAGGGGAGATCAGCCCTCAGGTCTGATGGGATCCTGGGGAGGGGGCTGTGGGCACCCCACTGTGCCCCAGAGTTCTGGGTGAGTTTGGGGGGCAGGGGGCAGAGGGCATCAGAGGACAGCCGCCTGGTGCCCATGCCATACTTTTGCCTCAGCCACCAGGTGCAGGTGAAGGAGGAGCCAGCAGAGGCAGAGGAAGACAGGC
...................................................................................................................((((.(((.....))))))).((((((((.((((..(((((((((.((....))..))))))))).))))...))..))))))....................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormTAX577740(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577742(Rovira)
total RNA. (breast)		SRR189785TAX577741(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038857(GSM458540)
D20. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR189784SRR040024(GSM532909)
G613N. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577744(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCT.....................................................22118.0018.004.001.002.001.001.00----2.00-------1.00-1.00----------1.00-1.00-----------1.00----1.00--------1.00---
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCA...................................................24113.0013.002.00--1.002.00--------1.00-1.00----------1.00----------1.00---1.00---1.00-1.001.00-------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCAGT.................................................2619.007.00----1.00--1.00---2.00------2.00-1.00------------1.00---------1.00------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTC....................................................2319.009.001.001.00-1.00--1.00-------1.00--------------1.00---------1.00--1.00------------1.00------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCAG..................................................2517.007.00-----1.00---------------1.00--1.00---1.00-----1.00----------------1.00--1.00-------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCC......................................................2114.004.00-1.00-----1.00--------------1.00---------------------------------1.00-----
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCT...................................................2414.009.00--1.00------1.00---1.00-------------------------------------------1.00----
...............................................................................................................................................................................TGCCCATGCCATACTTTTGC.......................................................2014.004.00-1.001.00---------------------------------1.00-------------1.00-----------
...................................................................................................................................................................................................................................AGCAGAGGCAGAGGAAGAC....1912.002.00------2.00-------------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTG........................................................1912.002.00--------1.00--------------------------------------------1.00--------
...................................................................................................................CAGAGTTCTGGGTGAGTTT....................................................................................................................1912.002.00------------2.00-------------------------------------------------
.....................................................................................................................................................................................TGCCATACTTTTGCCTTAG..................................................191.000.00-----------------1.00--------------------------------------------
............................................................................................................................................................................................CTTTTGCCTCAGCCACCAGGTGC.......................................2311.001.00-------------------------------1.00------------------------------
.......................................................................................AGGGGGCTGTGGGCA....................................................................................................................................................1501.001.00-------------------------1.00------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCATT.................................................2611.0013.00-------1.00------------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTG.........................................................181.000.00----------------1.00---------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGA.......................................................2011.002.00---------------1.00----------------------------------------------
..................................................................................................................................................................................CCATGCCATACTTTTGCCT.....................................................1911.001.00----------------------------------------------------1.00---------
.......................................................................TGATGGGATCCTGGGGAGGGGGCTGTGGGCAC...................................................................................................................................................3211.001.00--------------1.00-----------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTT.........................................................1811.001.00-1.00------------------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTAA...................................................2411.0018.00---1.00----------------------------------------------------------
....................................................................................................................................................................................................................................GCAGAGGCAGAGGAAGAC....1811.001.00----------1.00---------------------------------------------------
.............................................................................................................................................................................................................AGGTGCAGGTGAAGGAGGAGCC.......................2211.001.00--------------------------------------1.00-----------------------
...................................................GGGAGATCAGCCCTCAG......................................................................................................................................................................................1711.001.00-----------------------------------1.00--------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTA....................................................2311.0018.00--1.00-----------------------------------------------------------
..............................................................................................................................................................AGAGGACAGCCGCCTGG...........................................................................1711.001.00-----------------------1.00--------------------------------------
.............................................................................................................................................................................................................AGGTGCAGGTGAAGGAGGA..........................1911.001.00----------1.00---------------------------------------------------
...................................................................................................................................................................................................................AGGTGAAGGAGGAGCCAGCAGAGGCAG............2711.001.00-----1.00--------------------------------------------------------
..............................................................................................................................................................................................................GGTGCAGGTGAAGGAGGAGCCAG.....................2311.001.00----------1.00---------------------------------------------------
....................................................................................................CACCCCACTGTGCCCCCT....................................................................................................................................181.000.00----------------------------------------------1.00---------------
............................................................................................................................................................................................................................AGGAGCCAGCAGAGGCAGAGGAAGACAGTCAG321.000.00-----1.00--------------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCCAGT..................................................2511.004.00---------------------------1.00----------------------------------
.........................................................................................................................................................GCATCAGAGGACAGCC.................................................................................1670.140.14------------------------------------------------------------0.14-
.............CTGCCCCAGGACCAGC.............................................................................................................................................................................................................................1680.120.12-------------------------------------------------------------0.12

Antisense strand
CCCAGAGCAGTCTCTGCCCCAGGACCAGCTTTTCTTTGAAGAGAGCCCTAGGGGAGATCAGCCCTCAGGTCTGATGGGATCCTGGGGAGGGGGCTGTGGGCACCCCACTGTGCCCCAGAGTTCTGGGTGAGTTTGGGGGGCAGGGGGCAGAGGGCATCAGAGGACAGCCGCCTGGTGCCCATGCCATACTTTTGCCTCAGCCACCAGGTGCAGGTGAAGGAGGAGCCAGCAGAGGCAGAGGAAGACAGGC
...................................................................................................................((((.(((.....))))))).((((((((.((((..(((((((((.((....))..))))))))).))))...))..))))))....................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormTAX577740(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577742(Rovira)
total RNA. (breast)		SRR189785TAX577741(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038857(GSM458540)
D20. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR189784SRR040024(GSM532909)
G613N. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577744(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................GTGAGTTTGGGGGGCAT........................................................................................................... 171.000.00--------1.00-----------------------------------------------------
..................................................................AGGTCTGATGGGATCCGGC..................................................................................................................................................................... 191.000.00----------------------------------------1.00---------------------
...........CTCTGCCCCAGGACCCTCG............................................................................................................................................................................................................................ 191.000.00--------1.00-----------------------------------------------------
............................................................................................................................................................................................................CAGGTGCAGGTGAAGGACCTG......................... 211.000.00----------------1.00---------------------------------------------
...................................................................................................................CAGAGTTCTGGGTGA........................................................................................................................ 1570.140.14-----------------------------------------------------------0.14--