ID: dme-mir-289
chr3L:13613873-13614070 +
Display Libraries
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2OME_MUTANT.ip
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AGO2.ip
(2)
AGO2.mut
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AGO3.ip
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AUB.ip
(8)
BODY
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DCR2.mut
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EMBRYO
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GM2
(9)
HEAD
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OSS
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OVARY
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PIWI.ip
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(2)
PUPAE
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R2D2.mut
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S2
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S2_R
(35)
TOTAL_RNA.ip
(4)
WHOLE
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ZUC.mut
Showing top 43 reads
CGTCGTAGTCGCAGTCGTAGTCGCAGTCGTCGTCTACGGTTTTTAGGTTGAGTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGACTTCAGTCCCTCTGACTGACTGGGGTAAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATTGGGCGCTTGAAATTAGTGCGGCATGCCAGCAGCTA
....................................................(((((.((..((((((..(((((((((.((((.((...((((((.....)))))).))))))...)))))))))..))))))...)))))))......................................................
..................................................51...............................................................................................148................................................
Size Perfect hit Total Norm Perfect Norm SRR351333:GSM811192 IP:total RNA MUT:Nibbler ygenotype: nbr[f02257].. SRR351332:GSM811191 IP:total RNA Nibbler ygenotype: control wild type (w, 5905).. S19:GSM322219 IP:total RNA 2-4day pupae #1 S27:GSM360260 IP:total RNA 0-1d Pupae (w) SRR001349:GSM278705 IP:total RNA heterozygous_dcr-2_untreated SRR060648:GSM548587 IP:aub A2_ovaries_FLAG-Aub SRR065805:GSM593302 IP:piwi MUT:zuc Piwi-IP_zuc_het(H-Y)_ovaries V083:GSM609223 IP:total RNA male, one day V084:GSM609224 IP:total RNA female, one day SRR010953:SRX002238 IP:total RNA Aub heterozygotes, oxidized S26:GSM360257 IP:total RNA 1st instar #2 M069: IP:total RNA MUT:CG1091 Flag-HA-Ago2 S2R+, overexpression UAS1091 M065: MUT:CG1091 ovary - sample C, homozygous mutant S3:GSM286602 IP:total RNA male body SRR298712:GSM744620 MUT:Bam n: Bam Mutant.. V094:SRX247213 IP:ago2 FLAG-IP from S2-R+, FLAG-HA-AGO2 S24:GSM399107 IP:total RNA male body #2 V079: IP:2'Ome in mutant Oxidation, female head V019:GSM609219 IP:total RNA GM2 cell V139: IP:total RNA Cold_female_body V082:GSM609238 IP:total RNA embryo 14-24hr S18:GSM322208 IP:total RNA 3rd inster #2 V085: IP:total RNA CME W2 wing disc GSM467729: IP:total RNA Dmel_wt_sRNAseq SRR010959:SRX002244 IP:ago3 Ago3 IP in heterozygotes V021:GSM609220 IP:total RNA ML-DmD21 cell SRR298536:GSM744629 IP:total RNA erozygote.. M067: IP:total RNA MUT:CG1091 Flag-HA-Ago2 S2R+, knockdown DS1091 S2:GSM240749 IP:total RNA female head V136: IP:total RNA Male aged body SRR341117:GSM786606 IP:Nibbler MUT:Oxidized Schneider 2 (S2) cellsoxidation.. OSS8:GSM385822 IP:total RNA OSS_s8 SRR023407:SRX008041 IP:ago2 RNA bound by NLS-P19 protein V080: IP:total RNA Starvation, female head V0882:GSM628271 IP:total RNA MUT:r2d2 r2d2[1] ovary total RNA   S25:GSM360256 IP:total RNA 1st instar #1 V142: IP:total RNA Oxidation_female_body V141: IP:total RNA Heat_female_body V077: IP:total RNA cold, female head V086: IP:total RNA female body, aged GSM379059: MUT:piwi Piwi Mutant V081:GSM609229 IP:total RNA embryo 2-6hr SRR001664:GSM278703 IP:total RNA MUT:dcr2 homozygous_dcr-2_untreated SRR001347:GSM278704 IP:total RNA MUT:ago2 ago2_untreated SRR298711:GSM744619 SETDB1 Mutant.. SRR001348:GSM278693 IP:2'Ome in mutant MUT:ago2 ago2_oxidized SRR031703:GSM466496 IP:total RNA MUT:r2d2 Total small RNAs from r2d2 homozygous flies
..........................................................................AGTGGAGCCTGCG............................................................................................................... 13 11 13.00 13.00 7.55 4.82 - - 0.09 - - - - - - - - - 0.18 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.36 - -
..........................................................................AGTGGAGCCTGCGAC............................................................................................................. 15 1 6.00 6.00 1.00 - - - - - - - - - - 2.00 2.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................................................................TATTTAAGTGGAGCCgtac............................................................................................................... 19 gtac 4.00 0.00 - - - - - - - 1.00 - - - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..........................................................................AGTGGAGCCTGCGACTTaa......................................................................................................... 19 aa 4.00 0.00 - - 2.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................AGTGGAGCCTGCGACTTa.......................................................................................................... 18 a 4.00 0.00 - - - 1.00 - - - - - - - - - - - - 1.00 - - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................TGGAGCCTGCGACTTaatt....................................................................................................... 19 aatt 3.00 0.00 - - 1.00 - - - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................TATTTAAGTGGAGCCgta................................................................................................................ 18 gta 3.00 0.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...........................................................................GTGGAGCCTGCGACTTaa......................................................................................................... 18 aa 2.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........................................TTTAGGTTGAGTTTACca........................................................................................................................................... 18 ca 2.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
......AGTCGCAGTCGTAGTCGCAGTCGT........................................................................................................................................................................ 24 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................TTTTAGGTTGAGTTTAtc............................................................................................................................................ 18 tc 2.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - 1.00 - - - - -
............................................................................TGGAGCCTGCGACTTaat........................................................................................................ 18 aat 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................GTGGAGCCTGCGACTTaatt....................................................................................................... 20 aatt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................AGTGGAGCCTGCGACTTaat........................................................................................................ 20 aat 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................TTTTAGGTTGAGTTTAtca........................................................................................................................................... 19 tca 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................ATATTTAAGTGGAGCC................................................................................................................... 16 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................GCAGTCGTCGTCTACGGT.............................................................................................................................................................. 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.............................................................AAATAAATATTTAAGgggt...................................................................................................................... 19 gggt 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................AAAATAAATATTTAAagat....................................................................................................................... 19 agat 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
....................................................................TATTTAAGTGGAGCCgaac............................................................................................................... 19 gaac 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................TTAGGTTGAGTTTACAGTAAAATA.................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
......AGTCGCAGTCGTAGTCGCcgtc.......................................................................................................................................................................... 22 cgtc 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................TAAGTGGAGCCTGCGgct............................................................................................................ 18 gct 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................................TTAAGTGGAGCCTGCGgc............................................................................................................. 18 gc 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...CGTAGTCGCAGTCGTAGT................................................................................................................................................................................. 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........CGCAGTCGTAGTCGCAGTCGT........................................................................................................................................................................ 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................GTAAGTCACTTGAGCGTTggtt................................................................ 22 ggtt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................TTTAGGTTGAGTTTAtca........................................................................................................................................... 18 tca 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................CTTCAGTCCCTCTG................................................................................................ 14 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......AGTCGCAGTCGTAGTCGCAGTC.......................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................GTGGAGCCTGCGACT............................................................................................................ 15 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................TAAGTGGAGCCTGCGgctt........................................................................................................... 19 gctt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.........................................................................AAGTGGAGCCTGC................................................................................................................ 13 3 0.67 0.67 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.33 - - - -
............................................................................................AGTCCCTCTGACT............................................................................................. 13 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.25 - - -
..........................................................................................................ACTGGGGTAAGT................................................................................ 12 10 0.20 0.20 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.20
................................TCTACGGTTTTTA......................................................................................................................................................... 13 7 0.14 0.14 - - - - - - - - - - - - - - - 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................TTAAGTGGAGCC................................................................................................................... 12 8 0.12 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.12 - - -
........................................................................................................TGACTGGGGTA................................................................................... 11 17 0.06 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.06 - - -
CGTCGTAGTCGCAGTCGTAGTCGCAGTCGTCGTCTACGGTTTTTAGGTTGAGTTTACAGTAAAATAAATATTTAAGTGGAGCCTGCGACTTCAGTCCCTCTGACTGACTGGGGTAAGTCACTTGAGCGTTTGTTGGCACGTAAAAGACATCATAATTAGCATTGGGCGCTTGAAATTAGTGCGGCATGCCAGCAGCTA
....................................................(((((.((..((((((..(((((((((.((((.((...((((((.....)))))).))))))...)))))))))..))))))...)))))))......................................................
..................................................51...............................................................................................148................................................
Size Perfect hit Total Norm Perfect Norm SRR351333:GSM811192 IP:total RNA MUT:Nibbler ygenotype: nbr[f02257]..SRR351332:GSM811191 IP:total RNA Nibbler ygenotype: control wild type (w, 5905)..S19:GSM322219 IP:total RNA 2-4day pupae #1S27:GSM360260 IP:total RNA 0-1d Pupae (w)SRR001349:GSM278705 IP:total RNA heterozygous_dcr-2_untreatedSRR060648:GSM548587 IP:aub A2_ovaries_FLAG-AubSRR065805:GSM593302 IP:piwi MUT:zuc Piwi-IP_zuc_het(H-Y)_ovariesV083:GSM609223 IP:total RNA male, one dayV084:GSM609224 IP:total RNA female, one daySRR010953:SRX002238 IP:total RNA Aub heterozygotes, oxidizedS26:GSM360257 IP:total RNA 1st instar #2M069: IP:total RNA MUT:CG1091 Flag-HA-Ago2 S2R+, overexpression UAS1091M065: MUT:CG1091 ovary - sample C, homozygous mutantS3:GSM286602 IP:total RNA male bodySRR298712:GSM744620 MUT:Bam n: Bam Mutant..V094:SRX247213 IP:ago2 FLAG-IP from S2-R+, FLAG-HA-AGO2S24:GSM399107 IP:total RNA male body #2V079: IP:2'Ome in mutant Oxidation, female headV019:GSM609219 IP:total RNA GM2 cellV139: IP:total RNA Cold_female_bodyV082:GSM609238 IP:total RNA embryo 14-24hrS18:GSM322208 IP:total RNA 3rd inster #2V085: IP:total RNA CME W2 wing discGSM467729: IP:total RNA Dmel_wt_sRNAseqSRR010959:SRX002244 IP:ago3 Ago3 IP in heterozygotesV021:GSM609220 IP:total RNA ML-DmD21 cellSRR298536:GSM744629 IP:total RNA erozygote..M067: IP:total RNA MUT:CG1091 Flag-HA-Ago2 S2R+, knockdown DS1091S2:GSM240749 IP:total RNA female headV136: IP:total RNA Male aged bodySRR341117:GSM786606 IP:Nibbler MUT:Oxidized Schneider 2 (S2) cellsoxidation..OSS8:GSM385822 IP:total RNA OSS_s8SRR023407:SRX008041 IP:ago2 RNA bound by NLS-P19 proteinV080: IP:total RNA Starvation, female headV0882:GSM628271 IP:total RNA MUT:r2d2 r2d2[1] ovary total RNA  S25:GSM360256 IP:total RNA 1st instar #1V142: IP:total RNA Oxidation_female_bodyV141: IP:total RNA Heat_female_bodyV077: IP:total RNA cold, female headV086: IP:total RNA female body, agedGSM379059: MUT:piwi Piwi MutantV081:GSM609229 IP:total RNA embryo 2-6hrSRR001664:GSM278703 IP:total RNA MUT:dcr2 homozygous_dcr-2_untreatedSRR001347:GSM278704 IP:total RNA MUT:ago2 ago2_untreatedSRR298711:GSM744619 SETDB1 Mutant..SRR001348:GSM278693 IP:2'Ome in mutant MUT:ago2 ago2_oxidizedSRR031703:GSM466496 IP:total RNA MUT:r2d2 Total small RNAs from r2d2 homozygous flies
gcaGTCGTAGTCGCAGTCGTA................................................................................................................................................................................... 21 gca 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................tcgaTTTAGGTTGAGTTTAC............................................................................................................................................. 20 tcga 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................aataGTAAAAGACATCATAATT......................................... 22 aata 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................ACGTAAAAGACA................................................. 12 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.25 -
....................................................................................................................................................................GGCGCTTGAAATT..................... 13 7 0.14 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.14 - - - -
........................................................................................................................................................TAATTAGCATTGG................................. 13 9 0.11 0.11 - - - - 0.11 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -