Protein ID:gi|22855168|ref|NP_690838.1|_VP2-4-3_polyprotein_[Infectious_bursal_disease_virus] Protein Length: 1012
Library: s2
%ProteinCoverage %Similarity Similarity AlignCodons Candidate Stats Candidate Length Evalue Total Gaps Insertions MTNLQDQTQQIVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQNLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQAGGVTITLFSANIDAITSLSIGGELVFQTSVQGLILGATIYLIGFDGTAVITRAVAADNGLTAGTDNLMPFNIVIPTSEITQPITSIKLEIVTSKSGGQAGDQMSWSASGSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERDRLGIKTVWPTREYTDFREYFMEVADLNSPLKIAGAFGFKDIIRALRRIAVPVVSTLFPPAAPLAHAIGEGVDYLLGDEAQAASGTARAASGKARAASGRIRQLTLAADKGYEVVANLFQVPQNPVVDGILASPGILRGAHNLDCVLREGATLFPVVITTVEDAMTPKALNSKMFAVIEGVREDLQPPSQRGSFIRTLSGHRVYGYAPDGVLPLETGRVYTVVPIDGVWDDSIMLSKDPIPPIVGSSGNLAIAYMDVFRPKVPIHVAMTGALNAYGEIENVSFRSTKLATAHRLGLKLAGPGAFDVNTGSNWATFIKRFPHNPRDWDRLPYLNLPYLPPNAGRQYDLAMAASEFKETPELESAVRAMEAAANVDPLFQSALSVFMWLEENGIVTDMANFALSDPNAHRMRNFLANAPQAGSKSQRAKYGTAGYGVEARGPTPEGAQREKDTRISKKMETMGIYFATPEWVALNGHRGPSPGQLKYWQNTREIPDPNEDYLDYVHAEKSRLASEGQILRAATSIYGAPGQAEPPQAFIDEVAKVYEVNHGRGPNQEQMKDLLLTAMEMKHRNPRRAPPKPKPKPNVPTQRPPGRLGRWIRAVSDEDLE
45.36 44.23 207 468 V145:kmer=15:cov_cutoff=64:NODE_570_length_1412_cov_244.444763_s2 ... 1426 6.0892e-38 31 9 ................................................................................................................................................................................................................TQYEDINYSGPQQK-----RMLSFNIDSNILVMTKATLDINTTAPDAKVTITLKYLGIDGLVVSEDEIVSQENSLDRSVSIDAFYPFPQVIKEGG-QEPVAAVELYLASDKSTSVTGTIRS-------ITTAHSAARPGITSPTTIVAYEGVQYGASITVAGVSNYELIPNPELARNMETKYARTDPYGMIYTKYVLANRDKLGIRSVWPTNDYKARFPLFEELGLMQSDASITEAMAFGIHDVISWIRGL-VPAASDWANRMLPGTGDVIKGINRTAGHLLYGEAASGRLIAQSASGSLIGRLGHRDALACDVDPTL-MGHNAAQLICYYTALGVRSTGNRFYRIRLKTPKRNPRVTIFPALIFNT-TPLGPEVSGTQLYAVIEGLYN--QVPQSKFK-VTGKNGRTIYGIKPGAYIP--PGPDCTVVPISAITQNEITTTATP-PIPRGGSMEAALALLQHIPPGV.........................................................................................................................................................................................................................................................................................................................................................
................................................................................................................................................................................................................T..+D..+S...Q.......+.S.NID+...+.....L...T+.....+..T+..+G.DG..V.....V+.+N.L..+...D...PF..VI......+P+.+++L.+.+.KS....G...S.........T.H....PG...P.T+VAYE.V..G+.+TVAGVSN+ELIPNPELA+N+.T+Y.R.DP..M.YTK.+L+.RD+LGI++VWPT.+Y......F.E+..+.S...I..A.AFG..D+I..+R.+.VP..S.....+.P....+...I.....+LL..EA.+....A++ASG......G....L....D....+..N..Q+.......G+.++..................T+FP.+I......+.P+...++++AVIEG+....Q.P..+...+...+G..+YG..P...+P...G...TVVPI..+..+.I..+..P.P...G.S...A+A.+....P.V.........................................................................................................................................................................................................................................................................................................................................................
43.28 43.85 196 447 V145:kmer=17:cov_cutoff=64:NODE_23_length_1967_cov_1679.100708_s2 ... 1983 8.7557e-33 31 9 ...............................................................................................................................................................................................................................GIHTKEFSINVDSVGPIDIMWSGQM---TMVDEWTVTANYQPLNISGTLIAGSMKTLVWSNTGVANGNHYMNMNELNVSLFHENPPPEPVAALKVHITY---GNNTNGDSDFSVDSSFTINVIGGATIGVNSPTVVVGYQAVAEGTAITISGINNYELVPNPDLQKNLPMSYGKCDPQDLNYIKYILSNREKLGLRSVMTLAEYNRMKMYMHVLTNYNVDEKEAASFDFWHLLKQIKKVAVPLAATLAPQYAPIIGAASGLADAVLGDSA-SGRPVGNSASGMPISLSRRLR-------NAYSADSPLGEEHWKPNESEEFNKFDIIYD------VSYSSMALFPVIMME-HDKVIPSDPEELFIAVSLTDSLRKQIPNLEDMPYYTMGGHRVYNAVSTNTPSNHFLRSDYILLPCYQLLDGKLASSTSP-NKVTGTSHQLAIYAAD...............................................................................................................................................................................................................................................................................................................................................................
...............................................................................................................................................................................................................................G+....FS.N+D++..+.I...G++...T.V....+.A....+...GT.+...+...V.++.G+..G....N+...N+.+...+...+P+.++K+.I.....G........+S...S..+.+.GG...G...P..+V.Y+.VA.G+.+T++G++N+EL+PNP+L.KNL...YG+.DP..+NY.K.ILS.R++LG+++V....EY...+.Y...+.+.N...K.A.+F.F..+++.++++AVP+.+TL.P..AP+..A.....D.+LGD.A.+......+ASG...+.S.R+R.........Y...+.L.+....P..........I+........V......LFPV++....D.+.P........AV........Q.P+.......T+.GHRVY.............R..Y.++P...+.D..+..S..P...+.G+S..LAI...D...............................................................................................................................................................................................................................................................................................................................................................
24.31 51.97 132 254 V008:kmer=17:cov_cutoff=64:NODE_236_length_738_cov_148.876694_s2 ... 754 2.2071e-29 14 8 ...............................................................................................................................................................................................................................GIHTKEFSINVDSVGPIDIMWSGQM---TMVDEWTVTANYQPLNISGTLIAGSMKTLVWSNTGVANGNHYMNMNELNVSLFHENPPPEPVAALKVHITY---GNNTNGDSDFSVDSSFTINVIGGATIGVNSPTVVVGYQAVAEGTAITISGINNYELVPNPDLQKNLPMSYGKCDPQDLNYIKYILSNREKLGLRSVMTLAEYNRMKMYMHVLTNYNVDEKEAASFDFWHLLKQIKKVAVPLAATLAPQYAPI...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
...............................................................................................................................................................................................................................G+....FS.N+D++..+.I...G++...T.V....+.A....+...GT.+...+...V.++.G+..G....N+...N+.+...+...+P+.++K+.I.....G........+S...S..+.+.GG...G...P..+V.Y+.VA.G+.+T++G++N+EL+PNP+L.KNL...YG+.DP..+NY.K.ILS.R++LG+++V....EY...+.Y...+.+.N...K.A.+F.F..+++.++++AVP+.+TL.P..AP+...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
21.44 45.91 101 220 V008:kmer=15:cov_cutoff=64:NODE_1166_length_592_cov_31.967905_s2 ... 606 3.2042e-19 21 3 .........................................................................................................................................................................PASYDIDYTRLADLSPSSAKNG-----CVVNDSGQSLIYTQYEDINYSGPQQK-----RMLSFNIDSNILVMTKATLDINTTAPDAKVTITLKYLGIDGLVVSEDEIVSQENSLDRSVSIDAFYPFPQVIKEGG-QEPVAAVELYLASDKSTSVTGTIRS-------ITTAHSAARPGITSPTTIVAYEGVQYGASITVAGVSNYELIPNPELARNMETK..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.........................................................................................................................................................................P.SYD+.Y.RL.D..P+...+......C..+D..+....T..+D..+S...Q.......+.S.NID+...+.....L...T+.....+..T+..+G.DG..V.....V+.+N.L..+...D...PF..VI......+P+.+++L.+.+.KS....G...S.........T.H....PG...P.T+VAYE.V..G+.+TVAGVSN+ELIPNPELA+N+.T+..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
19.96 50.48 106 210 V145:kmer=19:cov_cutoff=64:NODE_74_length_623_cov_854.561768_s2 ... 641 7.5242e-22 14 8 ...............................................................................................................................................................................................................................GIHTKEFSINVDSVGPIDIMWSGQM---TMVDEWTVTANYQPLNISGTLIAGSMKTLVWSNTGVANGNHYMNMNELNVSLFHENPPPEPVAALKVHITY---GNNTNGDSDFSVDSSFTINVIGGATIGVNSPTVVVGYQAVAEGTAITISGINNYELVPNPDLQKNLPMSYGKCDPQDLNYIKYILSNREKLGLRSVMTLAEYNRMKMY...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
...............................................................................................................................................................................................................................G+....FS.N+D++..+.I...G++...T.V....+.A....+...GT.+...+...V.++.G+..G....N+...N+.+...+...+P+.++K+.I.....G........+S...S..+.+.GG...G...P..+V.Y+.VA.G+.+T++G++N+EL+PNP+L.KNL...YG+.DP..+NY.K.ILS.R++LG+++V....EY...+.Y...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
17.09 66.09 115 174 V145:kmer=15:cov_cutoff=64:NODE_577_length_682_cov_190.910553_s2 ... 696 8.9123e-43 1 1 .............YLRSILMPERGPASIPDDNVRRHCVRQETITANIVVGPSGKGAFVLFPNNPSSLIGAHFMYDNKDKKYKYTQSLVVAQRLNESYNYGRKSAGIIYIRSSTLPSGVYNISGTFNAATYEGPPSEVGLPEYNKILSITSNPMDKLGNVGVLEGVAVLTLPASYDIDYTRLADLSPS..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............++RS+LMP..GPASIPDD.+.+H.+R.ET.T.N+.VG.+G.G..V.FP..P.S++GAH+...+....YK+.Q.L+.AQ.L..SYNY.R..+..+.+RSSTLP.GVY.++GT.NA.T++G..SE+....YN.++S.T+N..DK+GNV.V.EGV.VL+LP.SYD+.Y.RL.D..P+..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
17.09 72.41 126 174 V008:kmer=17:cov_cutoff=64:NODE_196_length_686_cov_166.775513_s2 ... 702 2.7181e-47 1 1 .............YLKTLLNPAQFISDIPDDIMIRHVNRAETITYNLKSGPSGSGLIVIYPNTPSSISGFHYVWNSNSSSWVFDQYIYTAQELKDSYDYGRLISGSLSIKSSTLPAGVYALNGTFNAVWFQGTLSEVSDYSYDRILSITSNPLDKVGNVLVGDGLEILSLPQGFNNPYVRLGDKSPS..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............++++LL.P....+.IPDD.+.+H..R+ET.TYNL..G.+GSGLIV.+P..P.SI.G.HY...SN.+.+.FDQ.+.TAQ.L..SY+Y.RL+S.SL+++SSTLP.GVYALNGT.NAV.FQG+LSE++D.SY+.++S.T+N..DK+GNVLVG+G+.+LSLP..++..YVRLGD..P+..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
16.80 71.93 123 171 V145:kmer=19:cov_cutoff=64:NODE_18_length_505_cov_1069.679199_s2 ... 523 1.0301e-46 1 1 ................TLLNPAQFISDIPDDIMIRHVNRAETITYNLKSGPSGSGLIVIYPNTPSSISGFHYVWNSNSSSWVFDQYIYTAQELKDSYDYGRLISGSLSIKSSTLPAGVYALNGTFNAVWFQGTLSEVSDYSYDRILSITSNPLDKVGNVLVGDGLEILSLPQGFNNPYVRLGDKSPS..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
................+LL.P....+.IPDD.+.+H..R+ET.TYNL..G.+GSGLIV.+P..P.SI.G.HY...SN.+.+.FDQ.+.TAQ.L..SY+Y.RL+S.SL+++SSTLP.GVYALNGT.NAV.FQG+LSE++D.SY+.++S.T+N..DK+GNVLVG+G+.+LSLP..++..YVRLGD..P+..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
16.70 72.94 124 170 V008:kmer=19:cov_cutoff=64:NODE_96_length_604_cov_80.423843_s2 ... 622 8.4060e-47 1 1 .............YLKTLLNPAQFISDIPDDIMIRHVNRAETITYNLKSGPSGSGLIVIYPNTPSSISGFHYVWNSNSSSWVFDQYIYTAQELKDSYDYGRLISGSLSIKSSTLPAGVYALNGTFNAVWFQGTLSEVSDYSYDRILSITSNPLDKVGNVLVGDGLEILSLPQGFNNPYVRLGD..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............++++LL.P....+.IPDD.+.+H..R+ET.TYNL..G.+GSGLIV.+P..P.SI.G.HY...SN.+.+.FDQ.+.TAQ.L..SY+Y.RL+S.SL+++SSTLP.GVYALNGT.NAV.FQG+LSE++D.SY+.++S.T+N..DK+GNVLVG+G+.+LSLP..++..YVRLGD..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
15.51 67.09 106 158 SRR032093:kmer=17:cov_cutoff=64:NODE_99_length_657_cov_35.211567_s2 ... 673 1.4019e-37 1 1 .............YLRSILMPERGPSSIPDDNVRRHCVRQETITANIVVGPSGKGAFVLFPNNPSSLIGAHFMYDNKDRSYKYTQSLVVAQRLNESYNYGRKSAGIIYIRSSTLPSGVYNISGTFNAATYEGPPSEVGLPEYNKILSITSNPMDKLGNVGVLEGVAVLTLP..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............++RS+LMP..GP+SIPDD.+.+H.+R.ET.T.N+.VG.+G.G..V.FP..P.S++GAH+...+...+YK+.Q.L+.AQ.L..SYNY.R..+..+.+RSSTLP.GVY.++GT.NA.T++G..SE+....YN.++S.T+N..DK+GNV.V.EGV.VL+LP..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
14.33 66.44 97 146 SRR029028:kmer=15:cov_cutoff=64:NODE_948_length_630_cov_92.919044_s2 ... 644 5.0680e-34 1 1 .............YLRSILMPERGPSSIPDDNVRRHCVRQETITANIVVGPSGKGAFVLFPNNPSSLIGAHFMYDNKDRSYKYTQSLVVAQRLNESYNYGRKSAGIIYIRSSTLPSGVYNISGTFNAATYEGPPSEVGLPEYNKILSITSNPMDKLGNV......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............++RS+LMP..GP+SIPDD.+.+H.+R.ET.T.N+.VG.+G.G..V.FP..P.S++GAH+...+...+YK+.Q.L+.AQ.L..SYNY.R..+..+.+RSSTLP.GVY.++GT.NA.T++G..SE+....YN.++S.T+N..DK+GNV......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
13.04 57.97 80 138 SRR029028:kmer=15:cov_cutoff=64:NODE_1163_length_536_cov_82.979477_s2 ... 550 1.4101e-20 7 6 .............................................................................................................................................................................................................................................................................................................................................................................AGVSNYELIPNPELARNMETKFARTDPYGMIYTKYVLANRDKLGIRSVWPTNDYKARFPLFEELGLMQSDASITEAMAFGIHDVISWIRGL-VPAASDWANRMLPGTGDVIKGINRTAGHLLYGEAASGRLIAQSASG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............................................................................................................................................................................................................................................................................................................................................................................AGVSN+ELIPNPELA+N+.T++.R.DP..M.YTK.+L+.RD+LGI++VWPT.+Y......F.E+..+.S...I..A.AFG..D+I..+R.+.VP..S.....+.P....+...I.....+LL..EA.+....A++ASG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
11.46 46.28 56 121 V145:kmer=17:cov_cutoff=64:NODE_288_length_492_cov_266.335358_s2 ... 508 7.7077e-07 20 5 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAADRDPRMAKLKEVVLWLAKIDDNNPGVLDTLHNFSRQDVEGEKMNRIVQNSLTTA--------------VHSRGPTQDVLQHQRAVRIRENYLSQGVDLSI-EWIKNNGYRGPSAEQMK...........................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA+.DP.......V.+WL...++N..G++..+.NF+..D....+M...+.N+..................V.+RGPT.+..Q.++..RI.+...+.G+..+..EW+..NG+RGPS..Q+K...........................................................................................................................
11.46 46.28 56 121 V008:kmer=17:cov_cutoff=64:NODE_574_length_499_cov_24.629259_s2 ... 515 7.7692e-07 20 5 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAADRDPRMAKLKEVVLWLAKIDDNNPGVLDTLHNFSRQDVEGEKMNRIVQNSLTTA--------------VHSRGPTQDVLQHQRAVRIRENYLSQGVDLSI-EWIKNNGYRGPSAEQMK...........................................................................................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA+.DP.......V.+WL...++N..G++..+.NF+..D....+M...+.N+..................V.+RGPT.+..Q.++..RI.+...+.G+..+..EW+..NG+RGPS..Q+K...........................................................................................................................
10.57 68.52 74 108 80|458:V008-V145_unknown-contigs_all_s2 ... 458 1.4339e-24 1 1 .............YLKTLLNPAQFISDIPDDIMIRHVNRAETITYNLKSGPSGSGLIVIYPNTPSSISGFHYVWNSNSSSWVFDQYIYTAQELKDSYDYGRLISGSLSIKSSTLPAGVYAL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............++++LL.P....+.IPDD.+.+H..R+ET.TYNL..G.+GSGLIV.+P..P.SI.G.HY...SN..++.FDQ.+.TAQ.L..SY+Y.RL+S.SL+++SSTLP.GVYAL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
7.91 57.50 46 80 107|271:V008-V145_unknown-contigs_all_s2 ... 271 2.1756e-13 0 0 .............................................................................................................................................................................................................................................................................................................................GNNTNGDSDFSVDSSFTINVIGGATIGVNSPTVVVGYQAVAEGTAITISGINNYELVPNPDLQKNLPMSYGKCDPQDLNY.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
.............................................................................................................................................................................................................................................................................................................................G........+S...S..+.+.GG...G...P..+V.Y+.VA.G+.+T++G++N+EL+PNP+L.KNL...YG+.DP..+NY.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
4.94 60.00 30 50 27|268:V008-V145_unknown-contigs_all_s2 ... 268 7.0474e-04 1 0 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VHSRGPTQDVLQHQRAVRIRENYLSQGVDLSI-EWIKNNGYRGPSAEQMK...........................................................................................................................
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................V.+RGPT.+..Q.++..RI.+...+.G+..+..EW+..NG+RGPS..Q+K...........................................................................................................................
3.06 77.42 24 31 71|112:V008-V145_unknown-contigs_all_s2 ... 112 3.2293e-04 0 0 ...........................................................................................................................................................GNVLVGDGLEILSLPQGFNNPYVRLGDKSPS..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
...........................................................................................................................................................GNVLVG+G+.+LSLP..++..YVRLGD..P+..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................