ID:

der_78

Coordinate:

scaffold_4690:9682325-9682395 +

Confidence:

novel

Type:

intergenic

[View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-30.0 -29.8 -29.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTTTCCTTAATCTATATAAATCAGACTATACCATTTTAACGTCGACTTTTCGTGGTTGGTGGCTGAACTTAGATTTTGAGTATTCAAATAAAATAAATCTGTTCATTCCTCGACACAAGAAGTTGACGTGCAGGAGCGGCAAACATGAATCGAGTGAATCAGGAAAACAGA
***********************************...((((((((((((.(((.((((.((.(((((..((((((....(((....)))....)))))))))))..))))))))).)))))))))))).....*************************************
Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
.................................................................................................TCTGTTCATTCCTCGACACAAGT................................................... 23 1 1 43.00 43 43
.................................................................................................TCTGTTCATTCCTCGACACAAG.................................................... 22 0 1 13.00 13 13
.................................................................................................TCTGTTCATTCCTCGACACAA..................................................... 21 0 1 6.00 6 6
.................................................................................................TCTGTTCATTCCTCGACACA...................................................... 20 0 1 3.00 3 3
................................................................................................ATCTGTTCATTCCTCGACACAAGT................................................... 24 1 1 2.00 2 2
..................................................CGTGGTTGGTGGCTGAACTTAG................................................................................................... 22 0 1 2.00 2 2
..................................................CGTGGTTGGTGGCTGAACTTAGATT................................................................................................ 25 0 1 1.00 1 1
.................................................................................................TCTGTTCATTCCTAGACACAAG.................................................... 22 1 1 1.00 1 1
.................................................................................................TCTGTTCATTCCTCGACACAAGC................................................... 23 1 1 1.00 1 1

Anti-sense strand reads

TCTGTTTTCCTGATTCACTCGATTCATGTTTGCCGCTCCTGCACGTCAACTTCTTGTGTCGAGGAATGAACAGATTTATTTTATTTGAATACTCAAAATCTAAGTTCAGCCACCAACCACGAAAAGTCGACGTTAAAATGGTATAGTCTGATTTATATAGATTAAGGAAAG
*************************************.....((((((((((((.(((((((((..(((((((((((....(((....)))....))))))..))))).)).)))).))).))))))))))))...***********************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:38 PM