ID:

der_62

 Coordinate:

scaffold_4845:10618951-10619010 -

 Confidence:

novel

 Type:

intergenic

 [View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-28.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTGATTCTGCTTTTTAAATCGCCACCCAACTTATAGTTTTCCAGAAATATTTAAGTCTGTTATGCATAGTTTTGTGAGTTTGACAAAATCTGCACAACCGGCTTAATGTATTTTTAGAAAACGAGCACCTTAGTTGTAAAGAATAAACTAATTGTACAAA
***********************************((((((.(((((((((((((((.(((.((((..(((((((.......))))))).)))).))).))))))).)))))))).))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
......................................................................................AATCTGCACAACCGGCTTAATGT................................................... 23 0 1 262.00 262 262
......................................................................................AATCTGCACAACCGGCTTAAT..................................................... 21 0 1 84.00 84 84
......................................................................................AATCTGCACAACCGGCTTAATG.................................................... 22 0 1 40.00 40 40
..................................................TTAAGTCTGTTATGCATAGTTT........................................................................................ 22 0 1 30.00 30 30
......................................................................................AATCTGCACAACCGGCTTAA...................................................... 20 0 1 21.00 21 21
..................................................TTAAGTCTGTTATGCATAGTT......................................................................................... 21 0 1 19.00 19 19
......................................................................................AATCTGCACAACCGGCTTA....................................................... 19 0 1 11.00 11 11
..................................................TTAAGTCTGTTATGCATAGTTTT....................................................................................... 23 0 1 10.00 10 10
..................................................TTAAGTCTGTTATGCATAGT.......................................................................................... 20 0 1 8.00 8 8
......................................................................................AATCTGCACAACCGGCTTAATGTT.................................................. 24 1 1 3.00 3 3
......................................................................................AATCTGCACAACCGGCTTAATGA................................................... 23 1 1 3.00 3 3
...................................................TAAGTCTGTTATGCATAGTTTTG...................................................................................... 23 0 1 3.00 3 3
........................................................................................TCTGCACAACCGGCTTAATGT................................................... 21 0 1 2.00 2 2
..................................................TTAAGTCTGTTATGCATAGTTTTAA..................................................................................... 25 2 1 2.00 2 2
......................................................................................AATCTGCGCAACCGGCTTAATGT................................................... 23 1 1 2.00 2 2
......................................................................................AATCTTCACAACCGGCTTAATGT................................................... 23 1 1 2.00 2 2
......................................................................................AATCTGCACAACCGGCTTAATGTTT................................................. 25 1 1 2.00 2 2
......................................................................................AATCTGCACAACCGGCTTAATGAA.................................................. 24 1 1 2.00 2 2
......................................................................................AATCTGCACAACCGGCTTAAC..................................................... 21 1 1 2.00 2 2
..................................................TTAAGTCTGTTATGCATAGTTA........................................................................................ 22 1 1 2.00 2 2
..................................................TTAAGTCTGTTATGCATAGTTTTG...................................................................................... 24 0 1 2.00 2 2
..................................................TTAAGTCTGTTATGCATAGTTTTGTG.................................................................................... 26 0 1 1.00 1 1
......................................................................................AATCTGCACAACCGGCTTAATA.................................................... 22 1 1 1.00 1 1
..................................................TTAAGGCTGTTATGCATAGTTT........................................................................................ 22 1 1 1.00 1 1
........................................................................................TCTGCACAACCGGCTTAATGTT.................................................. 22 1 1 1.00 1 1
..................................................TTAAGTCTGTTATGCATAGTA......................................................................................... 21 1 1 1.00 1 1
......................................................................................AATCTGCACAACCGGCTTAATGTAA................................................. 25 1 1 1.00 1 1
......................................................................................AATCTGCACAACCGTCTTAATGT................................................... 23 1 1 1.00 1 1
......................................................................................AATCTGCACAACAGGCTTAA...................................................... 20 1 1 1.00 1 1
......................................................................................GATCTGCACAACCGGCTTAATG.................................................... 22 1 1 1.00 1 1
......................................................................................AATCTGCACAACCGGCTTCATGT................................................... 23 1 1 1.00 1 1
......................................................................................AATCTCCACAACCGGCTTAATGT................................................... 23 1 1 1.00 1 1
......................................................................................AATCTGCACAACCGGCTTAATGC................................................... 23 1 1 1.00 1 1
......................................................................................AATCTGCACAATCGGCTTCA...................................................... 20 2 1 1.00 1 1
.....................................................................................AAATCTGCACAACCGGCTTAAT..................................................... 22 0 1 1.00 1 1
......................................................................................AATCTGCACAACCGCCTTAATGT................................................... 23 1 1 1.00 1 1
..................................................TTAAGACTGTTATGCATAGT.......................................................................................... 20 1 1 1.00 1 1
......................................................................................AATCTGCACAACCGGCTTAATGTA.................................................. 24 0 1 1.00 1 1
......................................................................................AATCTGCACAACCGACTTAA...................................................... 20 1 1 1.00 1 1
..............................................................................TTTGACAAAATCTGCACAACCGGCT......................................................... 25 0 1 1.00 1 1
.........................................................................................CTGCACAACCGGCTTAATGT................................................... 20 0 1 1.00 1 1
......................................................................................AATCTGCACAACCGGCTTAATGTTA................................................. 25 2 1 1.00 1 1
......................................................................................AATCTGCACAACCTGCTTAATGTT.................................................. 24 2 1 1.00 1 1
......................................................................................AATCTTCACAACCGGCTTAATG.................................................... 22 1 1 1.00 1 1
.....................................................................................AAATGTGCACAACCGGCTTAA...................................................... 21 1 2 0.50 1 1
..................................................TTAAGTCTGTTATGCATAAT.......................................................................................... 20 1 2 0.50 1 1
..................................................TTAAGTCTGTTATGCATAAA.......................................................................................... 20 2 3 0.33 1 1
..................................................TTAAGTCTGTTATGCAGTTT.......................................................................................... 20 3 20 0.05 1 1

Anti-sense strand reads

TTTGTACAATTAGTTTATTCTTTACAACTAAGGTGCTCGTTTTCTAAAAATACATTAAGCCGGTTGTGCAGATTTTGTCAAACTCACAAAACTATGCATAACAGACTTAAATATTTCTGGAAAACTATAAGTTGGGTGGCGATTTAAAAAGCAGAATCAA
************************************..((((((.((((((((.(((((((.(((.((((.(((((((.......)))))))..)))).))).))))))))))))))).))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:38 PM