ID:

der_57

 Coordinate:

scaffold_4690:9673197-9673257 +

 Confidence:

novel

 Type:

antisense_to_intron

 [View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-27.9

Flybase annnotation

Antisense to intron [Dere\GG18050-in]

No Repeatable elements found

Sense Strand Reads

ATACACAGAGTATGGATGAGGTTGGATGAGATTTTACAGGGCTGTTACATAAATCTCTTCAAGCCGAAGGTCTATGTAAGTTTGGTTGGAATTCTGTGAGAAGAGATTTCTATAGCATCCTGAATACAGTCGGAATCTTCCAAGCTAATCAGTTGAATGTC
***********************************.(((((.(((((...((((((((((..((.(((..((((............)))).))).))..))))))))))...))))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
........................................................................................GAATTCTGTGAGAAGAGATTTC................................................... 22 0 1 480.00 480 480
.........................................................................................AATTCTGTGAGAAGAGATTTCT.................................................. 22 0 1 394.00 394 394
........................................................................................GAATTCTGTGAGAAGAGATTT.................................................... 21 0 1 62.00 62 62
.........................................................................................AATTCTGTGAGAAGAGATTTC................................................... 21 0 1 11.00 11 11
........................................................................................GAATTCTGTGAGAAGAGATTTCT.................................................. 23 0 1 6.00 6 6
........................................................................................GAATTCTGTGAGAAGAGATT..................................................... 20 0 1 4.00 4 4
..........................................................................................ATTCTGTGAGAAGAGATTTCT.................................................. 21 0 1 4.00 4 4
........................................................................................GAATTCTGTGAGAAGAGATTTT................................................... 22 1 1 4.00 4 4
..................................................AAATCTCTTCAAGCCGAAGGTC......................................................................................... 22 0 1 3.00 3 3
..ACACAGAATAAGGATGACGT........................................................................................................................................... 20 3 8 1.13 9 9
.........................................................................................AATTCTGGGAGAAGAGATTTCT.................................................. 22 1 1 1.00 1 1
........................................................................................GAATTCTGTGAGAAGAGATTTA................................................... 22 1 1 1.00 1 1
..................................................AAATCTCTTCAAGCCGAAGGTCT........................................................................................ 23 0 1 1.00 1 1
.............................GATTTTACAGGGCTGTTACAT............................................................................................................... 21 0 1 1.00 1 1
.........................................................................................AATTCTGTGAGAAGAGATTTCTT................................................. 23 1 1 1.00 1 1
..................................................AAATCTCTTCAAGCCGAAGGT.......................................................................................... 21 0 1 1.00 1 1
........................................................................................GAATTCTGTGAGAAGAGATTTCC.................................................. 23 1 1 1.00 1 1
.........................................................................................AATTCTGTGAGAGGAGATTTCT.................................................. 22 1 1 1.00 1 1
........................................................................................GAATTCTCTGAGAAGAGA....................................................... 18 1 1 1.00 1 1
..........................................................................................AATCTGTGAGAAGAGATTTCT.................................................. 21 1 1 1.00 1 1
.........................................................................................AATTCTGTGAGAAGAGATTT.................................................... 20 0 1 1.00 1 1
...................................................AATCTCTTCAAGCCGAAGGTC......................................................................................... 21 0 1 1.00 1 1
........................................................................................TAATTCTGCGAGAAGAGATTTC................................................... 22 2 1 1.00 1 1
........................................................................................GAATTCTGTGAGAAGAGGTTTCA.................................................. 23 2 1 1.00 1 1
.........................................................................................AATTCTGTGAGAAGCGATTTCT.................................................. 22 1 1 1.00 1 1
...................................................AATCTCTTCAAGCCGAAGGTCTA....................................................................................... 23 0 1 1.00 1 1
........................................................................................GAATTCTGTGGGAAGAGATTTC................................................... 22 1 1 1.00 1 1
.........................................................................................AATTCTGTGAGAAGATATTTCT.................................................. 22 1 1 1.00 1 1
........................................................................................TAATTCTGTGAGAAGAGATTTC................................................... 22 1 1 1.00 1 1
........................................................................................GCATTCTGTGAGCAGAGATTTC................................................... 22 2 1 1.00 1 1
........................................................................................GAATTCTGTGAGAAAAGATTTC................................................... 22 1 1 1.00 1 1
........................................................................................GAATTCTGTGAGAAGAGGTTTC................................................... 22 1 1 1.00 1 1
..........................................................................................TGTCTGTGAGAAGAGATTTCT.................................................. 21 2 1 1.00 1 1
........................................................................................GAATTCTGTGAGAAGAGATTTCA.................................................. 23 1 1 1.00 1 1
.........................................................................ATGTAAGTTTGGTTGGAATTC................................................................... 21 0 1 1.00 1 1
.........................................................................................AAGTCTGTGAGAAGAGATTTCT.................................................. 22 1 1 1.00 1 1
........................................................................................GAATTCTGTGAGTAGAGATTTC................................................... 22 1 1 1.00 1 1
........................................................................................GAGTTCTGTGAGAAGAGATTTC................................................... 22 1 1 1.00 1 1
.......................................................................................GGAATTCTGTGAGAAGAGATTTC................................................... 23 0 1 1.00 1 1
................................TTTACAGGGCTGTTACATA.............................................................................................................. 19 0 1 1.00 1 1
........................................................................................GAATTCTGCGAGAAGAGATTTC................................................... 22 1 1 1.00 1 1
........................................................................................GAATTCTGTGAGAAGCGATTTC................................................... 22 1 1 1.00 1 1
..ACACAGAGTAAGGATGACGT........................................................................................................................................... 20 2 1 1.00 1 1
........................................................................................GAATTCTGTGATAAGAGATTT.................................................... 21 1 1 1.00 1 1
........................................................................................GAATTCTGTGAGAAGAGATTAC................................................... 22 1 1 1.00 1 1
.........................................................................................AATTCTGTGAGAAGAGACTTCT.................................................. 22 1 1 1.00 1 1
.........................................................................................AATTCTGTGAGAACAGATTTCT.................................................. 22 1 1 1.00 1 1

Anti-sense strand reads

GACATTCAACTGATTAGCTTGGAAGATTCCGACTGTATTCAGGATGCTATAGAAATCTCTTCTCACAGAATTCCAACCAAACTTACATAGACCTTCGGCTTGAAGAGATTTATGTAACAGCCCTGTAAAATCTCATCCAACCTCATCCATACTCTGTGTAT
************************************...((((((((((...((((((((((..((.(((.((((............))))..))).))..))))))))))...))))).))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:38 PM