ID:

der_56

 Coordinate:

scaffold_4690:9688930-9688987 +

 Confidence:

novel

 Type:

intergenic

 [View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-35.7 -35.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAGCCTTGAAGCTCCAGAGGTGTGCCAGAATCGCATGCAGTGCCTCGACATTGGTGAGGGCATCTCCAATGGGGAGCCAGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCACCTACGAACTGAGCATTTGGGGATCGGGATCCCGGATTC
***********************************(((.((((.(((.(((((((((((((...((((((((..........))))))))...))))))))))))).))).)))).)))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
..................................................TTGGTGAGGGCATCTCCAATGG...................................................................................... 22 0 1 544.00 544 544
.....................................................................................TTGGATTAGTTCTCATTAATGC................................................... 22 0 1 178.00 178 178
.....................................................................................TTGGATTAGTTCTCATTAATG.................................................... 21 0 1 58.00 58 58
..................................................TTGGTGAGGGCATCTCCAATG....................................................................................... 21 0 1 46.00 46 46
....................................................................................ATTGGATTAGTTCTCATTAAT..................................................... 21 0 1 26.00 26 26
....................................................................................ATTGGATTAGTTCTCATTAATG.................................................... 22 0 1 20.00 20 20
.....................................................................................TTGGATTAGTTCTCATTAAT..................................................... 20 0 1 9.00 9 9
..................................................TTTGTGAGGGCATCTCCAATGG...................................................................................... 22 1 1 6.00 6 6
.................................................ATTGGTGAGGGCATCTCCAATG....................................................................................... 22 0 1 5.00 5 5
.................................................ATTGGTGAGGGCATCTCCAAT........................................................................................ 21 0 1 3.00 3 3
.....................................................................................TTGGATTAGTTCTCATTAATGCT.................................................. 23 1 1 3.00 3 3
..................................................TGGGTGAGGGCATCTCCAATGG...................................................................................... 22 1 1 3.00 3 3
.....................................................................................TTGGATTAGTTCTCATTAATGT................................................... 22 1 1 2.00 2 2
..................................................TTGGTGAGGGCATCTCCAATGGTT.................................................................................... 24 2 1 2.00 2 2
..................................................TTGGTGAGGGCATCTCCAATGGT..................................................................................... 23 1 1 2.00 2 2
.................................................ATTGGTGAGGGCATCTCCAA......................................................................................... 20 0 1 2.00 2 2
..................................................TTGGTGAGGGCATCTCCAATCG...................................................................................... 22 1 1 2.00 2 2
..................................................TTGGTGAGGGCATCTCCAAT........................................................................................ 20 0 1 2.00 2 2
.....................................................................................TTGGATTAGTTCTCATTAATGCA.................................................. 23 1 1 2.00 2 2
..................................................TTGGTGAGGTCATCTCCAATGG...................................................................................... 22 1 1 2.00 2 2
..................................................TTGGTGAGGGCATCTCCAATGGA..................................................................................... 23 1 1 2.00 2 2
..................................................TTGGTGATGGCATCTCCAATGG...................................................................................... 22 1 1 2.00 2 2
..................................................TTCGTGAGGGCATCTCCAATGG...................................................................................... 22 1 1 1.00 1 1
..................................................TTGGTGAGGGCATCTTCAATG....................................................................................... 21 1 1 1.00 1 1
....................................................................................ATTGGATTAGTTCTCTTTAATG.................................................... 22 1 1 1.00 1 1
..................................................TTGGTGAGGACATCTCCAATGG...................................................................................... 22 1 1 1.00 1 1
.............................ATCGCATGCAGTGCCTCGAC............................................................................................................. 20 0 1 1.00 1 1
..................................................TTGGTGAGGGCATCTCCACTG....................................................................................... 21 1 1 1.00 1 1
..................................................TTGGTGAGGGCATCTCTAATGG...................................................................................... 22 1 1 1.00 1 1
.....................................................................................TTGGATTAGATCTCATTAATGC................................................... 22 1 1 1.00 1 1
.....................................................................................TTTGATTAGTTCTCATTAATGC................................................... 22 1 1 1.00 1 1
..................................................TTGGTGAGGGCATCTCCAGTGG...................................................................................... 22 1 1 1.00 1 1
..................................................TTTGTGAGGGCATCTCCAATG....................................................................................... 21 1 1 1.00 1 1
..................................................TTGGTGAGGGCATCTCCGATGG...................................................................................... 22 1 1 1.00 1 1
.................................................ATAGGTGAGGGCATCTCCAATG....................................................................................... 22 1 1 1.00 1 1
.....................................................................................TTGGATTAGTTCTCATTAATGCC.................................................. 23 0 1 1.00 1 1
....................................................................................ATTGGATTAGTTCTCATTAATGT................................................... 23 1 1 1.00 1 1
.................................................ATTGGTGAGGGCATCTCCAATT....................................................................................... 22 1 1 1.00 1 1
.....................................................................................TTGGTTTAGTTCTCATTAATGC................................................... 22 1 1 1.00 1 1
..................................................TTGGTGAGGGCATCTCCAATGC...................................................................................... 22 1 1 1.00 1 1
.....................................................................................TTGGATTAGTTCTCATTGATGG................................................... 22 2 1 1.00 1 1
..................................................ATGGTGAGGGCATCTCCAATG....................................................................................... 21 1 1 1.00 1 1
..................................................TTGGTGAGGGCATCTCCAACGG...................................................................................... 22 1 1 1.00 1 1
..................................................TTGGTGAGGGCGTCTCCAATGG...................................................................................... 22 1 1 1.00 1 1
.....................................................................................TTGGATTAGTTCTCATTAATT.................................................... 21 1 1 1.00 1 1
..................................................TTGGCGAGGGCATCTCCAATGG...................................................................................... 22 1 1 1.00 1 1
..................................................TTGGTGAGGGCATCTCCAATGT...................................................................................... 22 1 1 1.00 1 1
..................................................TTAGTGAGGGCATCTCCAATGG...................................................................................... 22 1 1 1.00 1 1
..................................................TTGGTGAAGGCATCTCCAATGG...................................................................................... 22 1 1 1.00 1 1
..................................................TTGGTGAGGGCATCTCAAATGG...................................................................................... 22 1 1 1.00 1 1
...................................................TTGGTAGGGCATCTCCAATGG...................................................................................... 21 3 3 0.33 1 1

Anti-sense strand reads

GAATCCGGGATCCCGATCCCCAAATGCTCAGTTCGTAGGTGCCATGCTCCGGCATTAATGAGAACTAATCCAATGATGCTGGCTCCCCATTGGAGATGCCCTCACCAATGTCGAGGCACTGCATGCGATTCTGGCACACCTCTGGAGCTTCAAGGCTT
************************************...(((.((((.(((.(((((((((((((...((((((((..........))))))))...))))))))))))).))).)))).)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total
................TCCCGAATAGCTCAGTTCGTAG........................................................................................................................ 22 3 1 1.00 1

Generated: 01/18/2014 at 01:37 PM