ID:

der_46

 Coordinate:

scaffold_4690:1630746-1630805 -

 Confidence:

novel

 Type:

intergenic

 [View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-36.2 -36.0 -35.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAGATTGGGCATTATTTGGACACAAGAGATTTTTAATGTCGAAGTGTTCTAGGGAGGATACCTGGTGTGTTGTATTTTAAAAATCAATCATCGGCTATCTTTCCTAGAATAATATGACATAGACACACGTAATAATAAAGTATTACATTTTAGTCCACA
***********************************.((((((...((((((((((((((((.((((((.((((.((((...)))))))))))))).))))))))))))))))...))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
..................................................TAGGGAGGATACCTGGTGTGT......................................................................................... 21 0 1 549.00 549 549
..................................................TAGGGAGGATACCTGGTGTGTTG....................................................................................... 23 0 1 549.00 549 549
..................................................TAGGGAGGATACCTGGTGTGTT........................................................................................ 22 0 1 215.00 215 215
..................................................TAGGGAGGATACCTGGTGTG.......................................................................................... 20 0 1 147.00 147 147
..................................................TAGGGAGGATACCTGGTGTGTTT....................................................................................... 23 1 1 48.00 48 48
.......................................................................................ATCATCGGCTATCTTTCCTAGA................................................... 22 0 1 42.00 42 42
..................................................TAGGGAGGATACCTGGTGT........................................................................................... 19 0 1 42.00 42 42
..................................................TAGGGAGGATACCTGGTGTGTTGT...................................................................................... 24 0 1 36.00 36 36
..................................................TAGGGAGGATACCTGGTGTGA......................................................................................... 21 1 1 17.00 17 17
..................................................TAGGGAGGATACCTGGTGTGTTA....................................................................................... 23 1 1 10.00 10 10
..................................................TAGGGAGGATACCTGGTGTGTTGA...................................................................................... 24 1 1 8.00 8 8
.......................................................................................ATCATCGGCTATCTTTCCTAGAA.................................................. 23 0 1 8.00 8 8
..................................................TAGGGAGGATACCTGGTGTGTTTT...................................................................................... 24 1 1 7.00 7 7
..................................................TAGGGAGGATACCTGGTGTGTA........................................................................................ 22 1 1 6.00 6 6
..................................................TAGGGAGGATACCTGGTGTGTAT....................................................................................... 23 2 1 5.00 5 5
..................................................TAGGGAGGATACCTGGTGTT.......................................................................................... 20 1 1 5.00 5 5
.......................................................................................ATCATCGGCTATCTTTCCTAG.................................................... 21 0 1 4.00 4 4
.......................................................................................ATCATCGGCTATCTTTCCTAGT................................................... 22 1 1 4.00 4 4
..................................................TAGGGAGGATACCTGGTGTGTTAT...................................................................................... 24 1 1 4.00 4 4
..................................................TAGGGAGGATACCTGGTGTGTTGTT..................................................................................... 25 1 1 4.00 4 4
..................................................TATGGAGGATACCTGGTGTGTTG....................................................................................... 23 1 1 4.00 4 4
..................................................TAGGGAGGATACCTGGTGTGTTAA...................................................................................... 24 2 1 3.00 3 3
..................................................TGGGGAGGATACCTGGTGTGTT........................................................................................ 22 1 1 3.00 3 3
..................................................TAGGGAGTATACCTGGTGTGTTG....................................................................................... 23 1 1 2.00 2 2
..................................................TATGGAGGATACCTGGTGTGT......................................................................................... 21 1 1 2.00 2 2
..................................................TAGGGAGGATACCTGGTGTGTAA....................................................................................... 23 2 1 2.00 2 2
..................................................TAGGGAGGATACCTGGTGCGTTG....................................................................................... 23 1 1 2.00 2 2
..................................................TAGGGAGGATACCTGGTGTGTTGTAT.................................................................................... 26 0 1 2.00 2 2
..................................................TAGGGAGGATACCTGGTGTA.......................................................................................... 20 1 1 2.00 2 2
..................................................TAGGGAGGATACCTGGTGTTG......................................................................................... 21 2 1 2.00 2 2
..................................................TAGGGCGGATACCTGGTGTGTTG....................................................................................... 23 1 1 2.00 2 2
..................................................TAGGGAGGATACCTGGTGTGCTG....................................................................................... 23 1 1 2.00 2 2
..................................................TAGGGAGGATACCTGGTGTGAAT....................................................................................... 23 3 1 1.00 1 1
..................................................TAGGTAGGATACCTGGTGTGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGTAGGATACCTGGTGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTCT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGAGAGGATACCTGGTGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGCTACCTGGTGTGT......................................................................................... 21 1 1 1.00 1 1
...............................................ATCTAGGGAGGATACCTGGTGTGTTG....................................................................................... 26 1 1 1.00 1 1
..................................................TACGGAGGATACCTGGTGTGTTGT...................................................................................... 24 1 1 1.00 1 1
..................................................TAGTGAGGATACCTGGTGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTGTTT.................................................................................... 26 1 1 1.00 1 1
..................................................TAGGGAGGAAACCTGGTGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTA............................................................................................ 18 1 1 1.00 1 1
..................................................TAGGGAGGATAGCTGGTGT........................................................................................... 19 1 1 1.00 1 1
.......................................................................................ATCATCGGCTATCTTTCCTAGCAT................................................. 24 1 1 1.00 1 1
................................................TCTAGGGAGGATACCTGGTGTG.......................................................................................... 22 0 1 1.00 1 1
.......................................................................................ATCATCGGCTATCTTTCCTAGAAA................................................. 24 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGAT........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTGATT.................................................................................... 26 2 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTTTAT.................................................................................... 26 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGA........................................................................................... 19 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTAAT..................................................................................... 25 3 1 1.00 1 1
..................................................TAGGGAGGATACCTGCTGTG.......................................................................................... 20 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTTTT..................................................................................... 25 2 1 1.00 1 1
..................................................TAGGGAGGATACCTGGCGTGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TAAGGAGGATACCTGGTGT........................................................................................... 19 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTATA...................................................................................... 24 3 1 1.00 1 1
..................................................TAGGTAGGATACCTGGTGTGTTG....................................................................................... 23 1 1 1.00 1 1
..................................................TGGGGAGGATACCTGGTGTGTTG....................................................................................... 23 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTGTTAA................................................................................... 27 3 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTTAAT.................................................................................... 26 2 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTATGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTAAAA..................................................................................... 25 3 1 1.00 1 1
..................................................TAGAGAGGATACCTGGTGTGTTG....................................................................................... 23 1 1 1.00 1 1
..................................................TAGGGAGGATACATGGTGTGTTG....................................................................................... 23 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTCTT...................................................................................... 24 2 1 1.00 1 1
..................................................TAGGGGGGATACCTGGTGTG.......................................................................................... 20 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTGTA..................................................................................... 25 0 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGGGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGTAGGATACCTGGTGTG.......................................................................................... 20 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTGTAA.................................................................................... 26 1 1 1.00 1 1
..................................................TAGGGAGGATACATGGTGTGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTTAG..................................................................................... 25 3 1 1.00 1 1
..................................................TATGGAGGATACCTGGTGTGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGGAGGATAGCTGGTGTGTTTT...................................................................................... 24 2 1 1.00 1 1
..................................................TAGGGAGGATTCCTGGTGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGATACCTTGTGTGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGGAGGATATCTGGTGTGTTG....................................................................................... 23 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGATGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGATACCTTGTGT........................................................................................... 19 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTCTGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGGAGGCTACCTGGTGTGTTG....................................................................................... 23 1 1 1.00 1 1
..................................................TAGGGAGAATACCTGGTGTG.......................................................................................... 20 1 1 1.00 1 1
..................................................TATGGAGGATACCTGGTGTGTTT....................................................................................... 23 2 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTATTG....................................................................................... 23 1 1 1.00 1 1
..................................................TAGGGGTGATACCTGGTGTGTTG....................................................................................... 23 2 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTGC...................................................................................... 24 1 1 1.00 1 1
..................................................TAGGGAGGATATCTGGTGTGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGGATGATACCTGGTGTGTA........................................................................................ 22 2 1 1.00 1 1
..................................................TAGGGAGGATACCTGTTGTG.......................................................................................... 20 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTC........................................................................................ 22 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGAGTGTTG....................................................................................... 23 1 1 1.00 1 1
.......................................................................................ATCATCGGCTATCTTTCCTAGAT.................................................. 23 1 1 1.00 1 1
.......................................................................................ATCATCGACTATCTTTCCTAGT................................................... 22 2 1 1.00 1 1
.......................................................................................ATCATCGGCTATCTTTCCTAGAG.................................................. 23 1 1 1.00 1 1
..................................................TAGGGAGGATACCAGGTGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTATG.......................................................................................... 20 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGCT........................................................................................ 22 1 1 1.00 1 1
...............................................ATCTAGGGAGGATACCTGGTGTGA......................................................................................... 24 2 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTATT...................................................................................... 24 2 1 1.00 1 1
..................................................TGGGGAGGATACCTGGTGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGATATCTGGTGTGT......................................................................................... 21 1 1 1.00 1 1
..................................................TAGGGAGGACACCTGGTGTGTT........................................................................................ 22 1 1 1.00 1 1
..................................................TCGGGAGGATACCTGGTGTGTTG....................................................................................... 23 1 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTGTTAT................................................................................... 27 2 1 1.00 1 1
..................................................TAGGGAGGATACCTGGTGTGTTGAA..................................................................................... 25 1 1 1.00 1 1
..................................................TATGGAGGATACCTGGTGTG.......................................................................................... 20 1 1 1.00 1 1
..................................................TAGGGAGGATACCCTGTGT........................................................................................... 19 2 1 1.00 1 1

Anti-sense strand reads

TGTGGACTAAAATGTAATACTTTATTATTACGTGTGTCTATGTCATATTATTCTAGGAAAGATAGCCGATGATTGATTTTTAAAATACAACACACCAGGTATCCTCCCTAGAACACTTCGACATTAAAAATCTCTTGTGTCCAAATAATGCCCAATCTTG
************************************...((((((...((((((((((((((((.((((((((((((((...)))).)))).)))))).))))))))))))))))...)))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:37 PM