ID:

der_34

 Coordinate:

scaffold_4690:9672360-9672417 +

 Confidence:

novel

 Type:

antisense_to_intron

 [View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-25.5 -25.5 -25.2

Flybase annnotation

Antisense to intron [Dere\GG18050-in]

No Repeatable elements found

Sense Strand Reads

ATCCGGCAAAGTGAATACCAGTACTATACTGTATCTATACTTTTTAAAACATTCTTATTCGGTCCGCTTCTGCAAAGTTTTTATTGCAGCGTGTCAAATGAGAAAGTTTTAGAAAGCGATTACAATCAACAACCCAAAATATCATATGTTTAAACTTT
***********************************....(((((((((((.((((((((.((..(((..((((((........)))))).))))).)))))))).)))))))))))......************************************ 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
.....................................................................................GCAGCGTGTCAAATGAGAAAGT................................................... 22 0 1 969.00 969 969
..................................................ATTCTTATTCGGTCCGCTTCTG...................................................................................... 22 0 1 460.00 460 460
......................................................................................CAGCGTGTCAAATGAGAAAGTT.................................................. 22 0 1 396.00 396 396
.....................................................................................GCAGCGTGTCAAATGAGAAAG.................................................... 21 0 1 395.00 395 395
......................................................................................CAGCGTGTCAAATGAGAAAGT................................................... 21 0 1 307.00 307 307
..................................................ATTCTTATTCGGTCCGCTTCT....................................................................................... 21 0 1 253.00 253 253
..................................................ATTCTTATTCGGTCCGCTTCTGCA.................................................................................... 24 0 1 115.00 115 115
......................................................................................CAGCGTGTCAAATGAGAAAG.................................................... 20 0 1 76.00 76 76
..................................................ATTCTTATTCGGTCCGCTTCTGC..................................................................................... 23 0 1 57.00 57 57
.....................................................................................GCAGCGTGTCAAATGAGAAA..................................................... 20 0 1 45.00 45 45
..................................................ATTCTTATTCGGTCCGCTTCTGCAA................................................................................... 25 0 1 40.00 40 40
..................................................ATTCTTATTCGGTCCGCTTC........................................................................................ 20 0 1 35.00 35 35
..................................................ATTCTTATTCGGTCCGCTTCTGT..................................................................................... 23 1 1 24.00 24 24
.................................................CATTCTTATTCGGTCCGCTTCTG...................................................................................... 23 0 1 20.00 20 20
.................................................CATTCTTATTCGGTCCGCTTCTGCA.................................................................................... 25 0 1 11.00 11 11
.....................................................................................GCAGCGTGTCAAATGAGAAAGTT.................................................. 23 0 1 10.00 10 10
......................................................................................CAGCGTGTCAAATGAGAAAGTTT................................................. 23 0 1 10.00 10 10
.................................................CATTCTTATTCGGTCCGCTTCTGC..................................................................................... 24 0 1 10.00 10 10
......................................................................................CAGCGTGTCAAATGAGAAA..................................................... 19 0 1 8.00 8 8
.......................................................................................AGCGTGTCAAATGAGAAAGTT.................................................. 21 0 1 8.00 8 8
.......................................................................................AGCGTGTCAAATGAGAAAGT................................................... 20 0 1 7.00 7 7
....................................................................................TGCAGCGTGTCAAATGAGAAAG.................................................... 22 0 1 7.00 7 7
....................................................................................TGCAGCGTGTCAAATGAGAAA..................................................... 21 0 1 7.00 7 7
..................................................ATTCTTATTCGGTCCGCTTCTT...................................................................................... 22 1 1 6.00 6 6
....................................................................................TGCAGCGTGTCAAATGAGAA...................................................... 20 0 1 4.00 4 4
.....................................................................................GCAGCGTGTCAAATGAGAAAGC................................................... 22 1 1 3.00 3 3
..................................................ATTCTTATTCGTTCCGCTTCTG...................................................................................... 22 1 1 3.00 3 3
.................................................CATTCTTATTCGGTCCGCTTCT....................................................................................... 22 0 1 3.00 3 3
.......................................................................................AGCGTGTCAAATGAGAAAGTTTT................................................ 23 0 1 3.00 3 3
.....................................................................................GGAGCGTGTCAAATGAGAAAGT................................................... 22 1 1 3.00 3 3
.....................................................................................GCAGCTTGTCAAATGAGAAAGT................................................... 22 1 1 3.00 3 3
.....................................................................................ACAGCGTGTCAAATGAGAAAGT................................................... 22 1 1 3.00 3 3
..................................................ATTCTTATTCGGTCCGCTT......................................................................................... 19 0 1 3.00 3 3
.....................................................................................GCAGCGTGTCAAATGAGAAGG.................................................... 21 1 1 2.00 2 2
......................................................................................CAGCGTGTCAAATGAGTAAGTT.................................................. 22 1 1 2.00 2 2
..................................................ATTCTTATTCGGTCCGCTTCTGTT.................................................................................... 24 2 1 2.00 2 2
.....................................................................................GCAGCGTGTGAAATGAGAAAGT................................................... 22 1 1 2.00 2 2
.....................................................................................GCAGCGTGTCAAATGATAAAG.................................................... 21 1 1 2.00 2 2
..............................................AAACATTCTTATTCGGTCCGCT.......................................................................................... 22 0 1 2.00 2 2
.....................................................................................GCAGCGTGTCAAATGAGAAGT.................................................... 21 2 1 2.00 2 2
.................................................CATTCTTATTCGGTCCGCTTC........................................................................................ 21 0 1 2.00 2 2
.....................................................................................GCAGCGTGTCAAATGAGAAAGG................................................... 22 1 1 2.00 2 2
...................................................TTCTTATTCGGTCCGCTTCTG...................................................................................... 21 0 1 2.00 2 2
..................................................AGTCTTATTCGGTCCGCTTCT....................................................................................... 21 1 1 2.00 2 2
.....................................................................................GCAGCGTGTCAAATGAGAAACT................................................... 22 1 1 2.00 2 2
......................................................................................CAGCGTGTCAAATGAGGAAGTT.................................................. 22 1 1 2.00 2 2
.....................................................................................GCAGTGTGTCAAATGAGAAAG.................................................... 21 1 1 2.00 2 2
.....................................................................................GCGGCGTGTCAAATGAGAAAGT................................................... 22 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGAGGAA..................................................... 20 1 1 1.00 1 1
......................................................................................CAGCGTGTCAAATGAGAAGG.................................................... 20 1 1 1.00 1 1
.....................................................................................GCAGCGTATCAAATGAGAAAGT................................................... 22 1 1 1.00 1 1
..................................................TTTCTTATTCGGTCCGCTTCT....................................................................................... 21 1 1 1.00 1 1
......................................................................................CAGCCTGTCAAATGAGAAAGT................................................... 21 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTACTG...................................................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCAGCTTCT....................................................................................... 21 1 1 1.00 1 1
......................................................................................CAGCGTATCAAATGAGAAAG.................................................... 20 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTTCTGCAAA.................................................................................. 26 0 1 1.00 1 1
......................................................................................CAGCGTGTCAAATGAGAAGTT................................................... 21 2 1 1.00 1 1
.....................................................................................GCAGCGTGTCGAATGAGAAAGT................................................... 22 1 1 1.00 1 1
...............................................AACATTCTTATTCGGTCCGCTTCTG...................................................................................... 25 0 1 1.00 1 1
...................................................TGCTTATTCGGTCCGCTTCTG...................................................................................... 21 1 1 1.00 1 1
.....................................................................................GCAGCGTGTAAAATGAGAAAG.................................................... 21 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAACGAGAAAGT................................................... 22 1 1 1.00 1 1
.....................................................................................TCAGCGTGTCAAATGAGAAAGT................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTTCTTC..................................................................................... 23 1 1 1.00 1 1
..................................................ATTCTTACTCGGTCCGCTTCTG...................................................................................... 22 1 1 1.00 1 1
......................................................................................CAGCGTGTCAAATGAGAAGT.................................................... 20 2 1 1.00 1 1
................................................................................CGATCGCAGCGTGTCAAATGAGAAAGT................................................... 27 3 1 1.00 1 1
..................................................ATTCTTATTCGCTCCGCTTCTG...................................................................................... 22 1 1 1.00 1 1
.................................................AATTCTTATTCGGTCCGCTTC........................................................................................ 21 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGAGAAGGT................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGGACCGCTTCT....................................................................................... 21 1 1 1.00 1 1
..................................................ATTCTTATTCAGTCCGCTTCT....................................................................................... 21 1 1 1.00 1 1
......................................................................................CAGCCTGTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
.....................................................................................GGAGCGTGTCAAATGAGAAA..................................................... 20 1 1 1.00 1 1
......................................................................................CCGCGTGTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
......................................................................................CAGCATGTCAAATGAGAAAGT................................................... 21 1 1 1.00 1 1
.....................................................................................TCAGCGTGTCAAATGAGAAAG.................................................... 21 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTTCACT..................................................................................... 23 3 1 1.00 1 1
......................................................................................CAGCGTGTCAAATGATAAAGT................................................... 21 1 1 1.00 1 1
.....................................................................................CCAGCGTGTCAAATGAGAAAGT................................................... 22 1 1 1.00 1 1
....................................................TCTTATTCGGTCCGCTTCT....................................................................................... 19 0 1 1.00 1 1
.....................................................................................GCAGCGCGTCAAATGAGAAAGT................................................... 22 1 1 1.00 1 1
......................................................................................CAGCGCGTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
..................................................ATTCTTATTCTGTCCGCTTCT....................................................................................... 21 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTTCTGCAAT.................................................................................. 26 1 1 1.00 1 1
........................................................................................GCGTGTCAAATGAGAAAG.................................................... 18 0 1 1.00 1 1
.....................................................................................GCTGCGTGTCAAATGAGAAAGT................................................... 22 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGAGAGAG.................................................... 21 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTTCCG...................................................................................... 22 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGAGCAAG.................................................... 21 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCCTCTG...................................................................................... 22 1 1 1.00 1 1
..........................................................................................GTGTCAAATGAGAAAGTTTTAGT............................................. 23 1 1 1.00 1 1
.....................................................................................GTAGCGTGTCAAATGAGAAAGT................................................... 22 1 1 1.00 1 1
......................................................................................AAGCGTGTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
..................................................AGTCTTATTCGGTCCGCTTCTGCAA................................................................................... 25 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTTCTACAA................................................................................... 25 1 1 1.00 1 1
......................................................................................CAGCGTGTCAAATGAGAAATTT.................................................. 22 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCTAATGAGAAAGT................................................... 22 1 1 1.00 1 1
.................................................CATTCTTATTCGGTCCGCT.......................................................................................... 19 0 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGAGATAGT................................................... 22 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATAAGAAAGT................................................... 22 1 1 1.00 1 1
.....................................................................................GAAGCGTGTCAAATGAGAAAGT................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCACTTCTG...................................................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTTCTACA.................................................................................... 24 1 1 1.00 1 1
.......................................................................................ATCGTGTCAAATGAGAAAGT................................................... 20 1 1 1.00 1 1
......................................................................................CAGCGTTTCAAATGAGAAAGT................................................... 21 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATCAGAAAGT................................................... 22 1 1 1.00 1 1
..................................................ATCCTTATTCGGTCCGCTTCTG...................................................................................... 22 1 1 1.00 1 1
......................................................................................CAGCTTGTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGAGCAAGT................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGTTCCGCTTCTT...................................................................................... 22 2 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGACAAAG.................................................... 21 1 1 1.00 1 1
......................................................................................CAGCATGTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
..................................................AGTCTTATTCGGTCCGCTTCTG...................................................................................... 22 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGCGAAAGT................................................... 22 1 1 1.00 1 1
..........................................................................................GTGTCAAATGAGAAAGTT.................................................. 18 0 1 1.00 1 1
...................................................TTCTTATTCGGTCCGCTTCT....................................................................................... 20 0 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGAGAAATT................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCTTG........................................................................................ 20 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCCGCT.......................................................................................... 18 0 1 1.00 1 1
......................................................................................CATCGTGTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCCAATGAGAAAGT................................................... 22 1 1 1.00 1 1
......................................................................................CAACGTGTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
.....................................................................................GCAACGTGTCAAATGAGAAAG.................................................... 21 1 1 1.00 1 1
....................................................................................TCCAGCGTGTCAAATGAGAAATTT.................................................. 24 2 1 1.00 1 1
.....................................................................................CCAGCGTGTCAAATGAGAAAG.................................................... 21 1 1 1.00 1 1
..................................................ATTCTTATTCGGGCCGCTTCTG...................................................................................... 22 1 1 1.00 1 1
......................................................................................CAGCGTGTCAAATGGGAAAGT................................................... 21 1 1 1.00 1 1
......................................................................................CAGCGTTTCAAATGAGAAAGTT.................................................. 22 1 1 1.00 1 1
.................................................CGTTCTTATTCGGTCCGCTTCT....................................................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGGTCAGCTTCTG...................................................................................... 22 1 1 1.00 1 1
..................................................ATTCTTATTCGGGCCGCTTCT....................................................................................... 21 1 1 1.00 1 1
..................................................ATGCTTATTCGGTCCGCTTCT....................................................................................... 21 1 1 1.00 1 1
.....................................................................................GCAGCGTGTCAAATGAGAGAGT................................................... 22 1 1 1.00 1 1
...................................................ATTCTATTCGGTCCGCTTCTG...................................................................................... 21 3 5 0.20 1 1

Anti-sense strand reads

AAAGTTTAAACATATGATATTTTGGGTTGTTGATTGTAATCGCTTTCTAAAACTTTCTCATTTGACACGCTGCAATAAAAACTTTGCAGAAGCGGACCGAATAAGAATGTTTTAAAAAGTATAGATACAGTATAGTACTGGTATTCACTTTGCCGGAT
************************************......(((((((((((.((((((((.(((((.((((((........))))))..)))..)).)))))))).)))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:37 PM