ID:der_27 |
Coordinate:scaffold_4690:1633140-1633202 - |
Confidence:novel |
Type:antisense_to_intron |
[View on UCSC Genome Browser] |
| Legend: | mature | star | mismatch in read |
|
|
|
| -31.0 |
 |
Antisense to intron [Dere\GG18704-in]
No Repeatable elements found
|
AGTGTATAGCTTAAATCCACCGGAATTGTGTGATATTATGTTACAGTGATTTAATAATTCGATTCGAAGTTATGTGCTTTAATCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCGTGTGAGAAATTGCTCATGATATGC
***********************************..((((((((((((((((((((((((.((((...(((((.............)))))...)))).)))))))))))))))))).))))))..************************************ |
Read size | # Mismatch | Hit Count | Total Norm | Total | V107 male body malebody |
|---|---|---|---|---|---|---|
| ...........................................................................................AATGCGAAACGGATTATTAAG................................................... | 21 | 0 | 1 | 2852.00 | 2852 | 2852 |
| ...........................................................................................AATGCGAAACGGATTATTAAGT.................................................. | 22 | 0 | 1 | 2547.00 | 2547 | 2547 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTT................................................. | 23 | 0 | 1 | 128.00 | 128 | 128 |
| ...........................................................................................AATGCGAAACGGATTATTAA.................................................... | 20 | 0 | 2 | 111.50 | 223 | 223 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTA................................................. | 23 | 1 | 1 | 53.00 | 53 | 53 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTAA................................................ | 24 | 1 | 1 | 48.00 | 48 | 48 |
| .........................................................................................TAAATGCGAAACGGATTATTAA.................................................... | 22 | 0 | 1 | 40.00 | 40 | 40 |
| ...........................................................................................AATGCGAAACGGATTATTAAGA.................................................. | 22 | 1 | 1 | 34.00 | 34 | 34 |
| ..........................................................................................AAATGCGAAACGGATTATTAAG................................................... | 22 | 0 | 1 | 34.00 | 34 | 34 |
| .........................................................................................TAAATGCGAAACGGATTATTAAG................................................... | 23 | 0 | 1 | 31.00 | 31 | 31 |
| ..................................................TTAATAATTCGATTCGAAGTTA........................................................................................... | 22 | 0 | 1 | 26.00 | 26 | 26 |
| ............................................................................................ATGCGAAACGGATTATTAAGT.................................................. | 21 | 0 | 1 | 19.00 | 19 | 19 |
| .........................................................................................TAAATGCGAAACGGATTATTAAA................................................... | 23 | 1 | 2 | 10.00 | 20 | 20 |
| ............................................................................................ATGCGAAACGGATTATTAAG................................................... | 20 | 0 | 1 | 8.00 | 8 | 8 |
| ...........................................................................................AATGCAAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 7.00 | 7 | 7 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTTA................................................ | 24 | 0 | 1 | 6.00 | 6 | 6 |
| ...........................................................................................AATGCGAAGCGGATTATTAAGT.................................................. | 22 | 1 | 1 | 5.00 | 5 | 5 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTAAA............................................... | 25 | 2 | 1 | 5.00 | 5 | 5 |
| ...........................................................................................AATGCGAAGCGGATTATTAAG................................................... | 21 | 1 | 1 | 4.00 | 4 | 4 |
| ...........................................................................................AATGCGAAACGGCTTATTAAGT.................................................. | 22 | 1 | 1 | 4.00 | 4 | 4 |
| .........................................................................................TAAATGCGAAACGGATTATTA..................................................... | 21 | 0 | 1 | 4.00 | 4 | 4 |
| ...........................................................................................AAGGCGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................AATGCGAAACGGACTATTAAG................................................... | 21 | 1 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................AATGCGAAACGGATTATCAAG................................................... | 21 | 1 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................AACGCGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................AATGCGAAACAGATTATTAAG................................................... | 21 | 1 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................AATGCGAAACGGATTATTA..................................................... | 19 | 0 | 2 | 3.00 | 6 | 6 |
| ...........................................................................................AGTGCGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 3.00 | 3 | 3 |
| ..........................................................................................CAATGCGAAACGGATTATTAAGT.................................................. | 23 | 1 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................AATGCTAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................AATGCGAAACGGATCATTAAG................................................... | 21 | 1 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................AATGCGAAACGGATTATTAAGC.................................................. | 22 | 1 | 2 | 2.50 | 5 | 5 |
| ...........................................................................................AATGCGAAACGGGTTATTAAG................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAATGGATTATTAAGT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATACGAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 |
| .............................................................................................TGCGAAACGGATTATTAAGT.................................................. | 20 | 0 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGTATTATTAAGT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| .........................................................................................TAAATGCGAAACGGATTATTAAGT.................................................. | 24 | 0 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTC................................................. | 23 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCAAAACGGATTATTAAG................................................... | 21 | 1 | 2 | 2.00 | 4 | 4 |
| ...........................................................................................AATACGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTTT................................................ | 24 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTATTAATT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTTAA............................................... | 25 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACTGATTATTAAGT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTATTACGT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| .............................................................................................TGCGAAACGGATTATTAAG................................................... | 19 | 0 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTATTAACT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGTGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTATAAAG................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 |
| ..........................................................................................CAATGCGAAACGGATTATTAAG................................................... | 22 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AAGGCGAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGAGAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................ACTGCGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATTCGAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 |
| ..........................................................................................AAATGCGAAACGGATTATTAA.................................................... | 21 | 0 | 2 | 2.00 | 4 | 4 |
| ...........................................................................................AATGCGAAATGGATTATTAAG................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGTGAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 2.00 | 2 | 2 |
| ..............................................................................................GCGAAACGGATTATTAAG................................................... | 18 | 0 | 1 | 2.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACTGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTCAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AAGGCGAAACGGATTATTAAGAA................................................. | 23 | 3 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAGAAA................................................ | 24 | 2 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATCAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAGCGGATTATTAAGTT................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAGACGGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| .........................................................................................TAAATGCGAAACGGATTATT...................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAGACGGATTATTAAGTA................................................. | 23 | 2 | 1 | 1.00 | 1 | 1 |
| .........................................................................................TAAATGCGAAACGGATTATTAAGA.................................................. | 24 | 1 | 1 | 1.00 | 1 | 1 |
| .............................................................................................TTCGAAACGGATTATTAAGTT................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAAAGGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAGGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTGAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGAATATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAGGCGGATTATTAAGT.................................................. | 22 | 2 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTTAT............................................... | 25 | 0 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AACGCGAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTG................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGGTTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTCTTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCTAAACTGATTATTAAGT.................................................. | 22 | 2 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AGTGCGAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACCGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCTAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGTAACGGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGAGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTAT................................................ | 24 | 2 | 1 | 1.00 | 1 | 1 |
| .............................................................................................AACGAAACGGATTATTAAGT.................................................. | 20 | 2 | 1 | 1.00 | 1 | 1 |
| .........................................................................................TAAATGCGAAACGGATTATTAAT................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCTAAACGGATTATTAAGTAA................................................ | 24 | 2 | 2 | 1.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTACTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGCATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| .........................................................................................TAAATGCGAAACGGATTATTAAAA.................................................. | 24 | 2 | 2 | 1.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTTTTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................ATTGCGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATTCGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ..................................................TTAATAATTCGATTCGAAGTTAA.......................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATCCGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTTAAA.............................................. | 26 | 2 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCCAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAGTAC................................................ | 24 | 2 | 1 | 1.00 | 1 | 1 |
| .........................................................................................TAAATACGAAACGGATTATTAA.................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AAGGCGAAACGGATTATTAAGTT................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTCTTCAG................................................... | 21 | 2 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATACGAAACGGATTATTAAGTT................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................GATGCGAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ..........................................................................................AAATGCGAAACGGATTATTAAGT.................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTCTTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGGGAAACGGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ..................................................TTAATAATTCGATTCGAAGTTAT.......................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCCAAACGGATTATTAAGT.................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 |
| ..................................................TTAATAATTCTATTCGAAGTTA........................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 |
| .........................................................................................TAAATGCGAAACGGATTATTAAAAA................................................. | 25 | 3 | 2 | 1.00 | 2 | 2 |
| ...........................................................................................AATGCGAAACGGATTATTAGG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGCAACGGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AGTGCGAAACGGATTCTTAAG................................................... | 21 | 2 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGAATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAAAGGATTATTAAG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTACG................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAT................................................... | 21 | 1 | 2 | 0.50 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGCTTATTAA.................................................... | 20 | 1 | 2 | 0.50 | 1 | 1 |
| ..........................................................................................AAATGCGAAACGGATTATT...................................................... | 19 | 0 | 2 | 0.50 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAGT................................................... | 21 | 2 | 2 | 0.50 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAGCT................................................. | 23 | 1 | 2 | 0.50 | 1 | 1 |
| ...........................................................................................AATGGGAAACGGATTATTAA.................................................... | 20 | 1 | 2 | 0.50 | 1 | 1 |
| ...........................................................................................AATGAGAAACGGATTATTAA.................................................... | 20 | 1 | 2 | 0.50 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATTAAATT................................................. | 23 | 1 | 2 | 0.50 | 1 | 1 |
| ...........................................................................................AACGCGAAACGGATTATTAAGC.................................................. | 22 | 2 | 2 | 0.50 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATCATTAA.................................................... | 20 | 1 | 2 | 0.50 | 1 | 1 |
| ..........................................................................................AAATGCGAAACAGATTATTAA.................................................... | 21 | 1 | 3 | 0.33 | 1 | 1 |
| ...........................................................................................AATGCGAAACGGATTATAAG.................................................... | 20 | 2 | 4 | 0.25 | 1 | 1 |
| ..................................AATATGTTACAGTGCGTTAAT............................................................................................................ | 21 | 3 | 4 | 0.25 | 1 | 1 |
| ...........................................................................................AATGCGTAACGGATTCTTC..................................................... | 19 | 3 | 17 | 0.06 | 1 | 1 |
|
GCATATCATGAGCAATTTCTCACACGCCAACGAGTTGAATGTTAACAATAACTTAATAATCCGTTTCGCATTTATGAATGATTAAAGCACATAACTTCGAATCGAATTATTAAATCACTGTAACATAATATCACACAATTCCGGTGGATTTAAGCTATACACT
************************************..((((((.((((((((((((((((((.((((...(((((.............)))))...)))).))))))))))))))))))))))))..*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | V107 male body malebody |
|---|---|---|---|---|---|---|
| .............................................................................................ACTTCGAATCGAATTATTAAAT................................................ | 22 | 0 | 1 | 17.00 | 17 | 17 |
| .............................................................................................ACTTCGAATCGAATTATTAAA................................................. | 21 | 0 | 1 | 3.00 | 3 | 3 |
| ...........................................................................................TAACTTCGAATCGAATTATTAAA................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 |
| .............................................................................................ACTTCGAATCGAATTATTGAAT................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 |
| .............................................................................................ACTTCGAATCGAATTATTAA.................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 |
| ....................................................TTAATAATCCGTTTCGCATTTA......................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 |
| ....................................................TTAATAATCCGTTTCGCATTT.......................................................................................... | 21 | 0 | 2 | 0.50 | 1 | 1 |
Generated: 01/18/2014 at 01:37 PM