ID:

der_173

 Coordinate:

scaffold_4690:9691198-9691289 +

 Confidence:

novel

 Type:

intergenic

 [View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-29.2 -29.0 -28.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGCTTATCGCGGGTGACCTGATTCAGGATTAAGAGGACGAAGTGCATCCAGTGGGCGGCACAACCAGCATTCTACGCCGCTGGCTTACGTTGTACTCGAAAATCGTGTCCAGTGCCGTTGATTGCAATTGTGTGGACGCAAAGGGCAGCGGAGGACATTTCAAATGGTTTATTGGTTCATACATAATTACAT
****************************************************..(((((((((...(((.((.(((.((((((..((((..............)))).)))))).))).)).)))..))))))...))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
........................................................................................................GTGTCCAGTGCCGTTGATTGC................................................................... 21 0 1 196.00 196 196
........................................................................................................GTGTCCAGTGCCGTTGATTG.................................................................... 20 0 1 158.00 158 158
...................................................................CATTCTACGCCGCTGGCTTACGT...................................................................................................... 23 0 1 29.00 29 29
.........................................................................................................TGTCCAGTGCCGTTGATTGCAA................................................................. 22 0 1 19.00 19 19
........................................................................................................GTGTCCAGTGCCGTTGATT..................................................................... 19 0 1 13.00 13 13
........................................................................................................GTGTCCAGTGCCGTTGATTGT................................................................... 21 1 1 10.00 10 10
...................................................................CATTCTACGCCGCTGGCTTACG....................................................................................................... 22 0 1 8.00 8 8
.........................................................................................................TGTCCAGTGCCGTTGATTGC................................................................... 20 0 1 7.00 7 7
.................................................................AGCATTCTACGCCGCTGGCTTACG....................................................................................................... 24 0 1 5.00 5 5
........................................................................................................GTTTCCAGTGCCGTTGATTG.................................................................... 20 1 1 3.00 3 3
........................................................................................................GTTTCCAGTGCCGTTGATTGC................................................................... 21 1 1 2.00 2 2
.........................................................................................................TGTCCAGTGCCGTTGATTG.................................................................... 19 0 1 2.00 2 2
........................................................................................................GTGTCCAGGGCCGTTGATTGC................................................................... 21 1 1 2.00 2 2
........................................................................................................GTGTCCAGTGCCGTTGATTT.................................................................... 20 1 1 2.00 2 2
.........................................................................................................TGTCCAGTGCCGTTGATTGCAAA................................................................ 23 1 1 2.00 2 2
................................................CAGTGGGCGGCACAACCAG............................................................................................................................. 19 0 1 2.00 2 2
........................................................................................................GTGTCCAGTGCCGTTGATTGA................................................................... 21 1 1 1.00 1 1
........................................................................................................GTGTCCAGTGCCGTTGATTGCA.................................................................. 22 0 1 1.00 1 1
........................................................................................................GTGTCCAGCGCCGTTGATTGC................................................................... 21 1 1 1.00 1 1
........................................................................................................GTGTCCAGTGCCGTTGAT...................................................................... 18 0 1 1.00 1 1
........................................................................................................GTGTCCAGTGACGTTGATTGC................................................................... 21 1 1 1.00 1 1
........................................................................................................GGGTCCAGTGCCGTTGATTG.................................................................... 20 1 1 1.00 1 1
....................................................................ATTCTACGCCGCTGGCTTACGT...................................................................................................... 22 0 1 1.00 1 1
........................................................................................................GTGTCCAGTGACGTTGATTGCAG................................................................. 23 2 1 1.00 1 1
.................................................................AGCATTCTACGCCGCTGGCTT.......................................................................................................... 21 0 1 1.00 1 1
.................................................................AGCATTCTACGCCGCTGGCTTACGT...................................................................................................... 25 0 1 1.00 1 1
........................................................................................................GTGTCCAGTGCCGTTGATTGCT.................................................................. 22 1 1 1.00 1 1
.........................................................................................................TGTCCAGTGCCGTTGATTGCAAT................................................................ 23 0 1 1.00 1 1
........................................................................................................GTGTCCAGTGCCGTTGATTGCTT................................................................. 23 2 1 1.00 1 1
.........................................................................................................TGTCCAGTGCCGTTGATTGCAT................................................................. 22 1 1 1.00 1 1
........................................................................................................GGGTCCAGTGCCGTTGATTGC................................................................... 21 1 1 1.00 1 1
........................................................................................................GTGTACAGTGCCGTTGATTGC................................................................... 21 1 1 1.00 1 1
........................................................................................................GTGTCCAGTGCCGTTGCTTG.................................................................... 20 1 1 1.00 1 1
........................................................................................................GTGTCCAGTGCTGTTGATTGT................................................................... 21 2 2 0.50 1 1
........................................................................................................GCGTCCAGTGCCGTTGATTGT................................................................... 21 2 2 0.50 1 1
.................................................................ACCATTCTACGCCGCTCTCTT.......................................................................................................... 21 3 3 0.33 1 1
.......................................AAGTGCAACCAGTGAGCGG...................................................................................................................................... 19 2 4 0.25 1 1

Anti-sense strand reads

ATGTAATTATGTATGAACCAATAAACCATTTGAAATGTCCTCCGCTGCCCTTTGCGTCCACACAATTGCAATCAACGGCACTGGACACGATTTTCGAGTACAACGTAAGCCAGCGGCGTAGAATGCTGGTTGTGCCGCCCACTGGATGCACTTCGTCCTCTTAATCCTGAATCAGGTCACCCGCGATAAGCT
****************************************************.(((...((((((..(((.((.(((.((((((.((((..............))))..)))))).))).)).)))...)))))))))..**************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:41 PM