ID:

der_172

Coordinate:

scaffold_4690:9689075-9689177 +

Confidence:

novel

Type:

intergenic

[View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-24.2 -22.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGATCCCGGATTCGGAGTCAACAAACTCTTGTCAAACAAACGAGCAGAATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATCACATCTTTATGCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAAGAAATAACGCCTTAACTCGGTCTGCAGCTCAAATAAACTTGGTGTTCAGTTTAAACT
*****************************************************...((((((((((..((((((((.((((((((................))))))))((((......))))))))))))..))))))))))...*********************************************************
Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
....................................................................TAGATAACTCGGGTATCACA................................................................................................................... 20 0 1 6.00 6 6
....................................................................TAGATAACTCGGGTATCACAT.................................................................................................................. 21 0 1 5.00 5 5
..............................................................................................................TGAGATAATTCACGTTGTCTA........................................................................ 21 0 1 5.00 5 5
..............................................................................................................TGAGATAATTCACGTTGTCT......................................................................... 20 0 1 2.00 2 2
.................................................TTCAACCCAAGGTATGGCC....................................................................................................................................... 19 0 1 1.00 1 1
....................................................................TAGATAACTAGGGTATCACAT.................................................................................................................. 21 1 1 1.00 1 1
..............................................................................................................TGAGATAATTCACGTTGTC.......................................................................... 19 0 1 1.00 1 1
................................................ATTCAACCCAAGGTATGGCC....................................................................................................................................... 20 0 1 1.00 1 1
....................................................................TAGATAACTCGGGTATCACATCT................................................................................................................ 23 0 1 1.00 1 1

Anti-sense strand reads

AGTTTAAACTGAACACCAAGTTTATTTGAGCTGCAGACCGAGTTAAGGCGTTATTTCTTACAAAACATGGTTTAGACAACGTGAATTATCTCACCAGATATCGAATGCATAAAGATGTGATACCCGAGTTATCTAGGCCATACCTTGGGTTGAATTCTGCTCGTTTGTTTGACAAGAGTTTGTTGACTCCGAATCCGGGATCC
*********************************************************...((((((((((..((((((((((((......))))((((((((................)))))))).))))))))..))))))))))...*****************************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:41 PM