ID:

der_171

 Coordinate:

scaffold_4690:9688771-9688861 +

 Confidence:

novel

 Type:

intergenic

 [View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-33.3 -33.3 -33.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAACGCAACCGGACAACCAGGGACTACGTCCAACCATCCAACCATCAACATTGAATTCTTGACTTTAAACACTTCCTACATCCTGTATGTGTTTTGCGCCCTATACAGATGTGGGGGTCGTTTGCACTCAGGGATTCCACAGGCTGCAAGGATCGGAGGAAGCCTTGAAGCTCCAGAGGTGTGCCAGAATC
**************************************************..((((((((((...((((((((.((((((((.(((((((((...))))...)))))))))))))))).)))))...))))))))))...*************************************************** 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
.................................................................TAAACACTTCCTACATCCTGTAT....................................................................................................... 23 0 1 4.00 4 4
................................................................TTAAACACTTCCTACATCCTGT......................................................................................................... 22 0 1 4.00 4 4
................................................................TTAAACACTTCCTACATC............................................................................................................. 18 0 1 2.00 2 2
........................................................................................................ACAGATGTGGGGGTCGTTTGC.................................................................. 21 0 1 1.00 1 1
.................................................................TAAACACTTCCTACATCCTGT......................................................................................................... 21 0 1 1.00 1 1
........................................................................................................ACAGATGTGGGGGTCGTTTG................................................................... 20 0 1 1.00 1 1
................................................................CTAAACACTTCCTACATCCTGTAT....................................................................................................... 24 1 1 1.00 1 1

Anti-sense strand reads

GATTCTGGCACACCTCTGGAGCTTCAAGGCTTCCTCCGATCCTTGCAGCCTGTGGAATCCCTGAGTGCAAACGACCCCCACATCTGTATAGGGCGCAAAACACATACAGGATGTAGGAAGTGTTTAAAGTCAAGAATTCAATGTTGATGGTTGGATGGTTGGACGTAGTCCCTGGTTGTCCGGTTGCGTTG
***************************************************...((((((((((...(((((.((((((((((((((((...((((...))))))))).)))))))).))))))))...))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total
................................................................................................AAGACACATAGAGGGTGTA............................................................................ 19 3 10 0.20 2
.................................................................................................................................................GATGGTTTGATGGTTGCTCGT......................... 21 3 5 0.20 1

Generated: 01/18/2014 at 01:41 PM