ID:

der-mir-312-1

 Coordinate:

scaffold_4845:10618162-10618227 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-27.2 -26.4 -26.4

Flybase annnotation

pre_miRNA [Dere\mir-312-1-RM]; miRNA [Dere\miR-312-1-RA]

No Repeatable elements found

Sense Strand Reads

TTAAAAATGACCATATTTATATAATTGATAATGTGAATTAAGTTTGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAACAAAACATTTTAAATAAAAACTAATACTAGTTATAGGTGGT
***************************************..((((((((...((((((.(((..((((.(((((.((((........)).)).))))).))))..)))))))))....))))))))...************************************* 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
............................................................................................TATTGCACTTGAGACGGCCGGA.................................................... 22 0 2 332.00 664 664
............................................................................................TATTGCACTTGAGACGGCCGG..................................................... 21 0 2 147.00 294 294
............................................................................................TATTGCACTTGAGACGGCCG...................................................... 20 0 2 108.00 216 216
............................................................................................TATTGCACTTGAGACGGCCGGT.................................................... 22 1 2 59.00 118 118
............................................................................................TATTGCACTTGAGACGGCCGGAT................................................... 23 0 2 59.00 118 118
............................................................................................TATTGCACTTGAGACGGCCGGTT................................................... 23 1 2 29.50 59 59
............................................................................................TATTGCACTTGAGACGGCCGT..................................................... 21 1 2 21.00 42 42
............................................................................................TATTGCACTTGAGACGGCCGGAA................................................... 23 1 2 16.50 33 33
............................................................................................TATTGCACTTGAGACGGCCGTTT................................................... 23 2 2 15.50 31 31
............................................................................................TATTGCACTTGAGACGGCCGGTTT.................................................. 24 1 2 11.00 22 22
............................................................................................TATTGCACTTGAGACGGCCT...................................................... 20 1 2 10.00 20 20
............................................................................................TATTGCACTTGAGACGGCCGTT.................................................... 22 2 2 9.50 19 19
............................................................................................TATTGCACTTGAGACGGCC....................................................... 19 0 2 9.50 19 19
............................................................................................TATTGCACTTGAGACGGCCGGATT.................................................. 24 0 2 9.50 19 19
.............................................................................................ATTGCACTTGAGACGGCCGGA.................................................... 21 0 2 6.50 13 13
.............................................................................................ATTGCACTTGAGACGGCCGGAT................................................... 22 0 2 6.00 12 12
............................................................................................TATTGCACTTGAGACGGCCGGTAT.................................................. 24 2 2 5.50 11 11
............................................................................................TATTGCACTTGAGACGGCCGGTA................................................... 23 2 2 5.00 10 10
............................................................................................TATTGCACTTGAGACGGCCGGAAT.................................................. 24 1 2 4.50 9 9
.............................................................................................ATTGCACTTGAGACGGCCGG..................................................... 20 0 2 4.00 8 8
............................................................................................TATTGCACTTGAGACGGCCGTA.................................................... 22 1 2 3.00 6 6
............................................................................................TATTGCACTTGAGACGGCCGGTTTT................................................. 25 2 2 2.50 5 5
............................................................................................TATTGCACTTGAGACGGCCGGATTT................................................. 25 1 2 2.50 5 5
............................................................................................TATTGCACTTGAGACGGCCGGAC................................................... 23 1 2 2.50 5 5
............................................................................................TATTGCACTTGAGACGGCCGGTTAT................................................. 25 3 2 2.50 5 5
............................................................................................TATTGCACTTGAGACGGCCGGAAA.................................................. 24 2 2 2.00 4 4
............................................................................................TATTGCACTTGAGACGGCCA...................................................... 20 1 2 2.00 4 4
............................................................................................TATTGCACTTGAGACGGCCGTAT................................................... 23 1 2 2.00 4 4
......................................................CGGTTCGTACCAGGAGCAATTCT......................................................................................... 23 0 2 2.00 4 4
............................................................................................TATTGCACTTGAGACGGCCGGTTA.................................................. 24 2 2 2.00 4 4
............................................................................................TATTGCACTTGAGACGGCCGTTAT.................................................. 24 3 2 1.50 3 3
............................................................................................TATTGCACTTGAGACGGCCGGATA.................................................. 24 1 2 1.50 3 3
............................................................................................TATTGCACTTGAGACGGCCGGTAA.................................................. 24 3 2 1.50 3 3
.............................................................................................ATTGCACTTGAGACGGCCGGT.................................................... 21 1 2 1.50 3 3
............................................................................................TATTGCACTTGAGACGGCCGGATTTT................................................ 26 2 2 1.50 3 3
............................................................................................TATCGCACTTGAGACGGCCGGA.................................................... 22 1 2 1.50 3 3
............................................................................................TATTGCACTTGAGACGGCCTGAT................................................... 23 1 2 1.50 3 3
............................................................................................TGTTGCACTTGAGACGGCCG...................................................... 20 1 2 1.00 2 2
............................................................................................TAGTGCACTTGAGACGGCCGGA.................................................... 22 1 2 1.00 2 2
............................................................................................TATTGCACTTGAGACGGCCGGATTAT................................................ 26 1 2 1.00 2 2
............................................................................................GATTGCACTTGAGACGGCCGGA.................................................... 22 1 2 1.00 2 2
.............................................................................................ATTGCACTTGAGACGGCCG...................................................... 19 0 2 1.00 2 2
............................................................................................TATTGCACTTGAGACGTCCGGA.................................................... 22 1 2 1.00 2 2
............................................................................................TATTCCACTTGAGACGGCCGGA.................................................... 22 1 2 1.00 2 2
............................................................................................TATTGCACTTGAGACGGCCGTAA................................................... 23 2 2 1.00 2 2
.............................................................................................ATTGCACTTGAGACGGCCGGTAT.................................................. 23 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACTGCCGGTT................................................... 23 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGACGGAA................................................... 23 2 2 0.50 1 1
............................................................................................TATTGCACTTGCGACGGCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGCTT.................................................. 24 1 2 0.50 1 1
............................................................................................TATTGTACTTGAGACGGCCG...................................................... 20 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGATTTTAT.............................................. 28 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTTA................................................. 25 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGATTTAT............................................... 27 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTTATA............................................... 27 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGTG.................................................... 22 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGAGT.................................................. 24 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGAATT................................................. 25 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGATG.................................................. 24 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGAAC.................................................. 24 2 2 0.50 1 1
............................................................................................TATTGCACCTGAGCCGGCCGGAAT.................................................. 24 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTAAT................................................ 26 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCTG..................................................... 21 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACTGCCGGAT................................................... 23 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTATG................................................. 25 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACCGCCG...................................................... 20 1 2 0.50 1 1
............................................................................................TATTGCACTTGGGACGGCCGG..................................................... 21 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGCCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACAGCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGTTTT.................................................. 24 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGTT....................................................... 19 2 4 0.50 2 2
............................................................................................TATTGCACTTGAGACGGCCGGATATT................................................ 26 3 2 0.50 1 1
............................................................................................TCTTGCACTTGAGACGGCCGGATAT................................................. 25 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGTGA................................................... 23 3 2 0.50 1 1
............................................................................................TATTGCACTTGATACGGCCG...................................................... 20 1 2 0.50 1 1
............................................................................................TATTACACTTGAGACGGCCG...................................................... 20 1 2 0.50 1 1
..............................................................................................TTGCACTTGAGACGGCCGGA.................................................... 20 0 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCAGAT................................................... 23 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGT........................................................ 18 1 2 0.50 1 1
............................................................................................TATTACACTTGAGACGGCCGGTT................................................... 23 2 2 0.50 1 1
.............................................................................................ATTGCACTTGAGACGGCCGGAAA.................................................. 23 2 2 0.50 1 1
............................................................................................TTTTGCACTTGAGACGGCCGG..................................................... 21 1 2 0.50 1 1
............................................................................................TATTGCACTCGAGACGGCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACACCCGG..................................................... 21 2 2 0.50 1 1
............................................................................................TATTGCACTTGATACGGCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGCCGGCCGGTTT.................................................. 24 2 2 0.50 1 1
.............................................................................................ATTGCACTTGAGATGGCCGGT.................................................... 21 2 2 0.50 1 1
.............................................................................................ATTGCACTTGAGACGGCCGGAGT.................................................. 23 1 2 0.50 1 1
............................................................................................TATTTCACTTGAGACGGCCGGA.................................................... 22 1 2 0.50 1 1
.............................................................................................ATTGCACTTGAGACGGCCGGTTAA................................................. 24 2 2 0.50 1 1
............................................................................................TATTGCACTTGAAACGGCCGGT.................................................... 22 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTATT................................................. 25 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGCATAT................................................. 25 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTGT.................................................. 24 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTAAA................................................ 26 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTTTG................................................ 26 3 2 0.50 1 1
............................................................................................TGTTGCACTTGAGACGGCCGGT.................................................... 22 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGAATG................................................. 25 2 2 0.50 1 1
............................................................................................TATTGAACTTGAGACGGCCG...................................................... 20 1 2 0.50 1 1
.............................................................................................ATTGCACTTGAGACGGCCGGAC................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGATT................................................... 23 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTG................................................... 23 2 2 0.50 1 1
............................................................................................TATTTCACTTGAGACGGCCG...................................................... 20 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACAGCCGG..................................................... 21 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCT....................................................... 19 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGC.................................................... 22 1 2 0.50 1 1
.............................................................................................ATTGCACTTGAGACGTCCGGTAT.................................................. 23 3 2 0.50 1 1
............................................................................................TATAGCACTTGAGACGGCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGATGGCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCTA..................................................... 21 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGATTT.................................................. 24 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTTAAT............................................... 27 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCAGGA.................................................... 22 1 2 0.50 1 1
............................................................................................GATTGCACTTGAGACGGCCGG..................................................... 21 1 2 0.50 1 1
.............................................................................................ATTGCACTTGAGACGGCCGGATT.................................................. 23 0 2 0.50 1 1
.............................................................................................ATTGCACTTGAGACGGCCGGAA................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGATTTTT............................................... 27 2 2 0.50 1 1
............................................................................................TATTCCACTTGAGACGGCCGG..................................................... 21 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTTAA................................................ 26 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGG.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGTTG................................................... 23 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTTG................................................. 25 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTTAT................................................ 26 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCAGGT.................................................... 22 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGGCGGCCGGAT................................................... 23 1 2 0.50 1 1
..............................................................................................TTGCACTTGAGACGGCCGGTT................................................... 21 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTATAT................................................ 26 3 2 0.50 1 1
............................................................................................TGTTGCACTTGAGACGGCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGTTA................................................... 23 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGACCG...................................................... 20 1 2 0.50 1 1
.............................................................................................ATTGCACTTGAGACGTCCGGA.................................................... 21 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACCGCCGG..................................................... 21 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGTTG.................................................. 24 2 2 0.50 1 1
............................................................................................CATTGCACTTGAGACGGCCGGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACTGCCGG..................................................... 21 1 2 0.50 1 1
.............................................................................................TATGCACTTGAGACGGCCG...................................................... 19 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCTGA.................................................... 22 1 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGAAAA................................................. 25 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCAGAA................................................... 23 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGTGAT.................................................. 24 3 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGAT.................................................... 22 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGCCGGATAT................................................. 25 2 2 0.50 1 1
............................................................................................TATTGCACTTGAGACGGTAT...................................................... 20 3 5 0.40 2 2
............................................................................................TATTGCACTTGAGACGGTA....................................................... 19 2 3 0.33 1 1
............................................................................................TATTGCACTTGAGCCGCCCGG..................................................... 21 2 3 0.33 1 1
............................................................................................TATTGCACTTGAGACTCCGG...................................................... 20 3 8 0.13 1 1
...................................................................................................CTTGAGACGGCCGGAAGAT................................................ 19 3 9 0.11 1 1
............................................................................................CATTGCACTTGAGACGGTTG...................................................... 20 3 13 0.08 1 1

Anti-sense strand reads

ACCACCTATAACTAGTATTAGTTTTTATTTAAAATGTTTTGTTTAAAAGTAATCCGGCCGTCTCAAGTGCAATACTAGCTTAAAAATGCAGAATTGCTCCTGGTACGAACCGAAGCGCTTCAAACTTAATTCACATTATCAATTATATAAATATGGTCATTTTTAA
*************************************...((((((((....(((((((((..((((.(((((.((.((........)))).))))).))))..))).))))))...))))))))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:55 PM