ID:

der-mir-311c

 Coordinate:

scaffold_4845:10618008-10618087 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-17.6 -17.4 -17.3

Flybase annnotation

pre_miRNA [Dere\mir-310b-RM]; pre_miRNA [Dere\mir-311c-RM]; miRNA [Dere\miR-311c-RA]

No Repeatable elements found

Sense Strand Reads

AAAAACTAATACTAGTTATAGGTGGTAAAAACAGTTGAAACCCCTACCCCTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCAGCCTGAAAATATCAAGGACTTACATCAAAAAGCGCTTGCAAATACACAAATATTTGCAGGACGGG
***********************************************.(((.((((.(((((.((..(((((.((((...((((((........))))))..)))).))..)))..)).))))))))).)))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
...................................................................................................TATTGCACATTCACCAGCCTGA........................................................... 22 0 1 93.00 93 93
...................................................................................................TATTGCACATTCACCAGCCTG............................................................ 21 0 1 13.00 13 13
...................................................................................................TATTGCACATTCACCAGCCTGT........................................................... 22 1 1 9.00 9 9
...................................................................................................TATTGCACATTCACCAGCCT............................................................. 20 0 1 4.00 4 4
...................................................................................................TATTGCACATTCACCAGC............................................................... 18 0 1 3.00 3 3
...................................................................................................TATTGCACATTCACCAGCCTGAA.......................................................... 23 0 1 3.00 3 3
...................................................................................................TATTGCACATTCACCAGCCTGAT.......................................................... 23 1 1 3.00 3 3
...................................................................................................TATTGCACATTCACCAGCCTGTA.......................................................... 23 1 1 2.00 2 2
...................................................................................................TATTGCACATTCACCAGCCTGAAT......................................................... 24 1 1 2.00 2 2
..............................................................CGGACGGTATCTGCGTCAATA................................................................................................. 21 0 2 2.00 4 4
...................................................................................................TATTGCACATTCACCACCCTGT........................................................... 22 2 1 1.00 1 1
...................................................................................................TATTACACATTCACCAGCCTGA........................................................... 22 1 1 1.00 1 1
..............................................................CGGACGGTATCTGCGTCAAT.................................................................................................. 20 0 2 1.00 2 2
...................................................................................................TATTGCACATTCACCAGCCTGAG.......................................................... 23 1 1 1.00 1 1
...................................................................................................TACTGCACATTCACCAGCCTGT........................................................... 22 2 1 1.00 1 1
..............................................................CGGACGGTATCTGCGTCAATATT............................................................................................... 23 0 2 1.00 2 2
...................................................................................................TATTGCATATTCACCAGCCTG............................................................ 21 1 1 1.00 1 1
..............................................................CGGACGGTATCTGCGTCAATATTA.............................................................................................. 24 1 2 0.50 1 1
..............................................................CGGACGGTATCTGCGTCAATATA............................................................................................... 23 1 2 0.50 1 1
..............................................................CGGACGGTATCTGCGCCAATATT............................................................................................... 23 1 2 0.50 1 1
..............................................................CGGACGGTATCTGCGTCAATATTTCCT........................................................................................... 27 0 2 0.50 1 1
...................................................................................................TATTGCACATTCACCTGCCTGA........................................................... 22 1 2 0.50 1 1
..............................................................CGGACGGTATCTGCGTCAATAT................................................................................................ 22 0 2 0.50 1 1
...................................................................................................TATTGCACATTCACCAGCCTGAAAG........................................................ 25 1 3 0.33 1 1

Anti-sense strand reads

CCCGTCCTGCAAATATTTGTGTATTTGCAAGCGCTTTTTGATGTAAGTCCTTGATATTTTCAGGCTGGTGAATGTGCAATATATTCTAACAAGGAAATATTGACGCAGATACCGTCCGAAAAACTATCTAGGGGTAGGGGTTTCAACTGTTTTTACCACCTATAACTAGTATTAGTTTTT
********************************************....(((.(((((((((.((..(((..((.((((..((((((........))))))...)))).)))))..)).))))).)))).))).*********************************************** 		Read size # Mismatch Hit Count Total Norm Total
...........................................................................................................................CTATCCAGGGGTGGGGGAT...................................... 19 3 10 0.10 1

Generated: 01/18/2014 at 01:55 PM