ID:

der-mir-311b-1

 Coordinate:

scaffold_4845:10616837-10616911 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-33.2 -33.0 -33.0

Flybase annnotation

pre_miRNA [Dere\mir-311b-1-RM]; miRNA [Dere\miR-311b-1-RA]

No Repeatable elements found

Sense Strand Reads

GTCGTCGCGAGTGGTCGTTTAAAACTATTGATCAAAGTCGATGTAGCCAACAATTTTCGGCTGTGGAGTGGGCTAGTACTGTGATTTTAACATTGAGTATTGCACATTCCCCAGCCTGAAAGTGTTTGCATTTGCCAAATATTAAAAATTACCATATTTATATAATTGATTATGT
******************************************...((.((((.((((((((((.((((((.((.(((((((((.......)))..)))))))).)))))).))))).))))))))).)).....***************************************** 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
.................................................................................................TATTGCACATTCCCCAGCCTGA........................................................ 22 0 2 195.50 391 391
.................................................................................................TATTGCACATTCCCCAGCCTGT........................................................ 22 1 2 81.50 163 163
.................................................................................................TATTGCACATTCCCCAGCCTG......................................................... 21 0 2 63.50 127 127
.................................................................................................TATTGCACATTCCCCAGCCT.......................................................... 20 0 2 56.50 113 113
.................................................................................................TATTGCACATTCCCCAGCCTGAA....................................................... 23 0 2 14.50 29 29
.................................................................................................TATTGCACATTCCCCAGCCTGAT....................................................... 23 1 2 6.00 12 12
.................................................................................................TATTGCACATTCCCCAGTTT.......................................................... 20 2 3 3.67 11 11
.................................................................................................TATTGCACATTCCCCAGCCTGAAT...................................................... 24 1 2 3.00 6 6
.........................................................CGGCTGTGGAGTGGGCTAGT.................................................................................................. 20 0 2 2.50 5 5
.................................................................................................TATTGCACATTCCCCAGC............................................................ 18 0 2 2.00 4 4
.................................................................................................TATTGCACATTCCCCAGCCTGTA....................................................... 23 1 2 1.50 3 3
.........................................................CGGCTGTGGAGTGGGCTAGTACT............................................................................................... 23 0 2 1.50 3 3
..................................................................................................ATTGCACATTCCCCAGCCTGAT....................................................... 22 1 2 1.50 3 3
.........................................................CGGCTGTGGAGTGGGCTAGTA................................................................................................. 21 0 2 1.50 3 3
.................................................................................................TATTGCACATTCCCCAGCCTGTT....................................................... 23 2 2 1.00 2 2
.................................................................................................TATTGCACATTCCCCAGCCTGAG....................................................... 23 1 2 1.00 2 2
.................................................................................................TATTGCACATTCCCCAGCCTT......................................................... 21 1 2 1.00 2 2
.................................................................................................TATTGCACATTCCCCAGCCTGAAA...................................................... 24 0 2 1.00 2 2
.................................................................................................TGTTGCACATTCCCCAGCCT.......................................................... 20 1 2 1.00 2 2
.................................................................................................TATTCCACATTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
.................................................................................................TATTGGACATTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCAAGC............................................................ 18 1 2 0.50 1 1
.........................................................CGGCTGTGGAGTGGGCTA.................................................................................................... 18 0 2 0.50 1 1
.................................................................................................TATTGCACATTCCTCAGCCT.......................................................... 20 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCCGCCT.......................................................... 20 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCC.......................................................... 20 1 2 0.50 1 1
.................................................................................................CATTGCACATTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCATCCTGT........................................................ 22 2 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCCGCCTGA........................................................ 22 1 2 0.50 1 1
...................................................................................................TTGCACATTCCCCAGCCTG......................................................... 19 0 2 0.50 1 1
...................................................................................................TTGCACATTCCCCAGCCTGA........................................................ 20 0 2 0.50 1 1
.................................................................................................TATTGCACATTACCCAGCCTGA........................................................ 22 1 2 0.50 1 1
..................................................................................................TTTGCACATTCCCCAGCCTG......................................................... 20 1 2 0.50 1 1
.................................................................................................TAGTGCACATTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
..................................................................................................ATTGCACATTCCCCAGCCTGA........................................................ 21 0 2 0.50 1 1
.................................................................................................TGTTGCACATTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
...................................................................................................TTGCACATTCCCCAGCCTGAT....................................................... 21 1 2 0.50 1 1
.................................................................................................TATTGCCCATTCCCCAGCCT.......................................................... 20 1 2 0.50 1 1
.................................................................................................TATCGCACATTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
.................................................................................................TCTTGCACATTCCCCAGCCTG......................................................... 21 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTGTAGT..................................................... 25 3 2 0.50 1 1
.................................................................................................TATTGCACACTCCCAAGCCTGA........................................................ 22 2 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTTT........................................................ 22 2 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTGAC....................................................... 23 1 2 0.50 1 1
.........................................................CGGCTGTGGAGTGGGCTAG................................................................................................... 19 0 2 0.50 1 1
.................................................................................................GATTGCACATTCCCCAGCCT.......................................................... 20 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTGAAC...................................................... 24 1 2 0.50 1 1
...................................................................................................TTGCACATTCCCCAGCCTGATT...................................................... 22 2 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTGC........................................................ 22 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGTAT.......................................................... 20 2 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTGTAT...................................................... 24 2 2 0.50 1 1
.................................................................................................TATTTCACATTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
..................................................................................................ATTGCACATTCCCCAGCCTGAA....................................................... 22 0 2 0.50 1 1
...................................................................................................TTGCACATTCCCCAGCCTGT........................................................ 20 1 2 0.50 1 1
.................................................................................................TATTGCACGTTCCCCAGCCTGT........................................................ 22 2 2 0.50 1 1
.................................................................................................TATTTCACATTCCCCAGCCTGAA....................................................... 23 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTGAGTT..................................................... 25 3 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTGTAA...................................................... 24 1 2 0.50 1 1
.................................................................................................TCTTGCACATTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
.................................................................................................TGTTGCACATTCCCCAGCCTG......................................................... 21 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCCTTA........................................................ 22 1 2 0.50 1 1
.................................................................................................TATTGTACATTCCCCAGCCTG......................................................... 21 1 2 0.50 1 1
.................................................................................................TATTGCACTTTCCCCAGCCTGA........................................................ 22 1 2 0.50 1 1
.................................................................................................TATTGCACATTCCCAAGCCTA......................................................... 21 2 2 0.50 1 1
.................................................................................................TATTGCACATTCCCCAGCAT.......................................................... 20 1 2 0.50 1 1
.................................................................................................TATTGCACATTCACCAGCCTGAAAG..................................................... 25 1 3 0.33 1 1
.................................................................................................TATTGCACATTCCCCAGCCTGTTG...................................................... 24 3 3 0.33 1 1
.................................................................................................TAGTGCACATTCCCCAGTTT.......................................................... 20 3 12 0.08 1 1

Anti-sense strand reads

ACATAATCAATTATATAAATATGGTAATTTTTAATATTTGGCAAATGCAAACACTTTCAGGCTGGGGAATGTGCAATACTCAATGTTAAAATCACAGTACTAGCCCACTCCACAGCCGAAAATTGTTGGCTACATCGACTTTGATCAATAGTTTTAAACGACCACTCGCGACGAC
*****************************************.....((.(((((((((.(((((.((((((.((((((((..(((.......))))))))).)).)))))).)))))))))).)))).))...****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:55 PM