ID:

der-mir-311a

 Coordinate:

scaffold_4845:10616549-10616628 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-20.3 -20.2 -20.1

Flybase annnotation

pre_miRNA [Dere\mir-310a-RM]; pre_miRNA [Dere\mir-311a-RM]; miRNA [Dere\miR-311a-RA]

No Repeatable elements found

Sense Strand Reads

TAAAAACTAATACTGTTATAGGCGGTAAAAACAGTTGAAACCCCTAACCCTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACTTACATCAAAAAGTCTTGCAAATACACAAATATTTGCAGGACGGGT
***********************************************.(((.((((..(((((((.((((((.((((...((((((........))))))..)))).))..))))..))))))))))).)))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
...................................................................................................TATTGCACATTCACCGGCCTGA........................................................... 22 0 1 29.00 29 29
...................................................................................................TATTGCACATTCACCGGCCTGT........................................................... 22 1 1 15.00 15 15
...................................................................................................TATTGCACATTCACCGGCCTG............................................................ 21 0 1 14.00 14 14
...................................................................................................TATTGCACATTCACCGGCCTGAT.......................................................... 23 1 1 6.00 6 6
...................................................................................................TATTGCACATTCACCGGCCT............................................................. 20 0 1 5.00 5 5
..............................................................CGGACGGTATCTGCGTCAATA................................................................................................. 21 0 2 2.00 4 4
...................................................................................................TATTTCACATTCACCGGCCTG............................................................ 21 1 1 1.00 1 1
...................................................................................................TATTGCACATTCACCGGCCTGAG.......................................................... 23 1 1 1.00 1 1
...................................................................................................TATTGCACATTCACCGGCCTGAAA......................................................... 24 0 1 1.00 1 1
...................................................................................................TATTGCACATTCACCGGCCTGTAT......................................................... 24 2 1 1.00 1 1
...................................................................................................TATTGCACATTCACCGGCCTGAAG......................................................... 24 1 1 1.00 1 1
...................................................................................................TATTGCACATTCACCGGCCTGATGT........................................................ 25 3 1 1.00 1 1
..............................................................CGGACGGTATCTGCGTCAATATT............................................................................................... 23 0 2 1.00 2 2
....................................................................................................ATTGCACATTCACCGGCCTGAA.......................................................... 22 0 1 1.00 1 1
...................................................................................................TATTGCACATTCACTGGCTTGA........................................................... 22 2 1 1.00 1 1
....................................................................................................ATTGCACATTCACCGGCCTG............................................................ 20 0 1 1.00 1 1
...................................................................................................TATTCCACATTCACCGGCCTGA........................................................... 22 1 1 1.00 1 1
..............................................................CGGACGGTATCTGCGTCAAT.................................................................................................. 20 0 2 1.00 2 2
...................................................................................................TATTGCACATTCACCGGC............................................................... 18 0 1 1.00 1 1
..............................................................CGGACGGTATCTGCGTCAATATTTCCT........................................................................................... 27 0 2 0.50 1 1
...................................................................................................TATTGCACATTCACCTGCCTGA........................................................... 22 1 2 0.50 1 1
..............................................................CGGACGGTATCTGCGCCAATATT............................................................................................... 23 1 2 0.50 1 1
..............................................................CGGACGGTATCTGCGTCAATATA............................................................................................... 23 1 2 0.50 1 1
..............................................................CGGACGGTATCTGCGTCAATAT................................................................................................ 22 0 2 0.50 1 1
..............................................................CGGACGGTATCTGCGTCAATATTA.............................................................................................. 24 1 2 0.50 1 1

Anti-sense strand reads

ACCCGTCCTGCAAATATTTGTGTATTTGCAAGACTTTTTGATGTAAGTCCTTGATATTTTCAGGCCGGTGAATGTGCAATATATTCTAACAAGGAAATATTGACGCAGATACCGTCCGAAAAACTATCTAGGGTTAGGGGTTTCAACTGTTTTTACCGCCTATAACAGTATTAGTTTTTA
********************************************....(((.(((((((((((..((((..((.((((..((((((........))))))...)))).)))))).)))))))..)))).))).*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 01/18/2014 at 01:55 PM