ID:

der-mir-310b

 Coordinate:

scaffold_4845:10617892-10617979 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser]
Legend: mature star mismatch in read

Predicted structure

-26.9 -26.4 -26.4

Flybase annnotation

pre_miRNA [Dere\mir-310b-RM]; miRNA [Dere\miR-310b-RA]; pre_miRNA [Dere\mir-311c-RM]; miRNA [Dere\miR-311c-RA]

No Repeatable elements found

Sense Strand Reads

TTCACCAGCCTGAAAATATCAAGGACTTACATCAAAAAGCGCTTGCAAATACACAAATATTTGCAGGACGGGTCGTGTGTTAATGTATAAATCTATTAGCTATATTGCACACTTCCCGCTCTTTAAATGTCCAGTGTTTCAACTTGAATATCATTTCGAGTTCAATGGAATTCGACAGTTCGTTCTTT
*************************************************.((((..(((((((.((((((((..((((((.((((((.............))))))))))))..)))).)))))))))))...))))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total V107
male body
malebody
......................................................................................................TATTGCACACTTCCCGCTCTTT................................................................ 22 0 1 37.00 37 37
......................................................................................................TATTGCACACTTCCCGCTCTT................................................................. 21 0 1 18.00 18 18
......................................................................................................TATTGCACACTTCCCGCTCT.................................................................. 20 0 1 6.00 6 6
......................................................................................................TATTGCACACTTCCCGCTCTTTT............................................................... 23 1 1 3.00 3 3
......................................................................................................TATTGCACACTTCCCGCT.................................................................... 18 0 1 2.00 2 2
......................................................................................................TATTGCACACTTCCCGCTC................................................................... 19 0 1 2.00 2 2
................................................................AGGACGGGTCGTGTGTTAATG....................................................................................................... 21 0 1 2.00 2 2
......................................................................................................TATTGCACACTTCCCGCTCTTTAT.............................................................. 24 1 1 1.00 1 1
......................................................................................................TATTGCACACTTCCCGCTCTTTG............................................................... 23 1 1 1.00 1 1
......................................................................................................TATTGCACACTTCCCGCTCG.................................................................. 20 1 1 1.00 1 1
......................................................................................................TATTGCACACTTCCCGCTTA.................................................................. 20 2 2 0.50 1 1

Anti-sense strand reads

AAAGAACGAACTGTCGAATTCCATTGAACTCGAAATGATATTCAAGTTGAAACACTGGACATTTAAAGAGCGGGAAGTGTGCAATATAGCTAATAGATTTATACATTAACACACGACCCGTCCTGCAAATATTTGTGTATTTGCAAGCGCTTTTTGATGTAAGTCCTTGATATTTTCAGGCTGGTGAA
*************************************************..((((...(((((((((((.((((..((((((((((((.............)))))).))))))..)))))))).)))))))..)))).************************************************* 		Read size # Mismatch Hit Count Total Norm Total
..AGAACGAACCGGCGAGTT........................................................................................................................................................................ 18 3 20 0.05 1

Generated: 01/18/2014 at 01:55 PM