ID:

ssc_5

 Coordinate:

chrX:137175092-137175168 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-14.1 -14.1 -13.9

Sense Strand Reads

ATAACACAGTCGGGGAGTATTTGGGCAGAGTCCCCACATTGAACCATACTCTGTGgtGTGggTgtgTggtttGtGTGggttTgtGGTtgtTTttttTtTGtTTGGgtgTTTTTtGtGTGTGGTttTTgtgtGgtTGTggtGTgtgtTGTGGTGGggTGGTGGGGACAATGTGGGTGT

***********************************((((.(((((((((.((........)).)))))))))))))..................................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274764

testes		 SRR066809

ovary
....................................................................................................ATTGGCACTTTTTAGAGTGTG........................................................ 21 0 1 417.00 417 365 16 14 16 6
....................................................................................................ATTGGCACTTTTTAGAGTGTGA....................................................... 22 1 1 396.00 396 292 59 40 2 3
....................................................................................................ATTGGCACTTTTTAGAGTGTGT....................................................... 22 1 1 149.00 149 7 98 44 0 0
....................................................................................................ATTGGCACTTTTTAGAGTG.......................................................... 19 0 1 98.00 98 13 64 21 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGT......................................................... 20 0 1 60.00 60 13 33 14 0 0
....................................................................................................ATTGGCACTTTTTAGAGT........................................................... 18 0 1 57.00 57 1 49 7 0 0
....................................................................................................ATTGGCACTTTTTAGAG............................................................ 17 0 1 32.00 32 0 19 13 0 0
....................................................................................................ATTGGCACTTTTTGGAGTGTGA....................................................... 22 2 1 7.00 7 5 1 0 0 1
....................................................................................................ATTGGCACTTTTTGGAGTGTG........................................................ 21 1 1 5.00 5 5 0 0 0 0
............................................CATACTCTGTGCAGTGCCT.................................................................................................................. 19 0 1 3.00 3 1 0 0 2 0
....................................................................................................ATTGGCACTTTTTAGAGTGTGTA...................................................... 23 2 2 3.00 6 0 4 2 0 0
...........................................CCATACTCTGTGCAGTGCCT.................................................................................................................. 20 0 1 3.00 3 0 1 0 2 0
....................................................................................................ATTGGCACTTTTTAGAGTGAG........................................................ 21 1 1 2.00 2 1 1 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGA......................................................... 20 1 1 2.00 2 1 1 0 0 0
...................................................................................................AATTGGCACTTTTTAGAGTGTGA....................................................... 23 2 1 2.00 2 1 0 1 0 0
....................................................................................................ATTGGCGCTTTTTAGAGTGTGT....................................................... 22 2 1 2.00 2 1 1 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGTGAA...................................................... 23 2 2 2.00 4 1 1 2 0 0
....................................................................................................ATTGGCACTTTTTTGAGTGTGA....................................................... 22 2 2 1.50 3 0 0 0 0 3
....................................................................................................ATTGGCACTTTTTAGAGTGCG........................................................ 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTATGA....................................................... 22 2 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGCGTGA....................................................... 22 2 1 1.00 1 0 1 0 0 0
.................................................................................................ATTATTGGCACTTTTTAGAGTGTGA....................................................... 25 2 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGGGTG........................................................ 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTACAGTGTGA....................................................... 22 2 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTCAGAGTGTG........................................................ 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGGGT....................................................... 22 2 1 1.00 1 0 1 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGTTA....................................................... 22 2 1 1.00 1 0 1 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGTGG....................................................... 22 0 1 1.00 1 1 0 0 0 0
.....................................................................................................TTGGCACTTTTTAGAGTGTGA....................................................... 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGTA........................................................ 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTGGAGTGTGT....................................................... 22 2 2 1.00 2 0 0 2 0 0
....................................................................................................ATTAGCACTTTTTAGAGTGTGT....................................................... 22 2 1 1.00 1 0 1 0 0 0
....................................................................................................ATTGGCACCTTTTAGAGTGTG........................................................ 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGTGAGA..................................................... 24 2 1 1.00 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTCTAGAGTGTG........................................................ 21 1 1 1.00 1 1 0 0 0 0
................................................................................................TGTGATTGGCACTTTTTAGAG............................................................ 21 1 1 1.00 1 0 0 1 0 0
....................................................................................................ATTGGCACTTTTTAGA............................................................. 16 0 1 1.00 1 0 1 0 0 0
.........................................AACCATACTCTGTGCAGTGCCT.................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0
....................................................................................................ATTGGCACTTTTTAGAGGGTGT....................................................... 22 2 1 1.00 1 0 0 1 0 0
....................................................................................................ATTGGCACTTTTTAGAGAGTG........................................................ 21 1 1 1.00 1 0 0 1 0 0
....................................................................................................ATTGGCACTTTTCAGAGTGTGT....................................................... 22 2 1 1.00 1 0 1 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGCGT....................................................... 22 2 1 1.00 1 0 0 1 0 0
....................................................................................................ATTGGCACTTTTTCGAGTGTGT....................................................... 22 2 1 1.00 1 0 1 0 0 0
....................................................................................................ATTGGCACTTTTTAGAGTGTGC....................................................... 22 1 2 1.00 2 2 0 0 0 0
....................................................................................................ATTGGCACTTTTTAGTGTGT......................................................... 20 1 2 0.50 1 0 0 1 0 0
....................................................................................................ATTGGCACTTTTTTGAGTG.......................................................... 19 1 2 0.50 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTAGAATGTGA....................................................... 22 2 2 0.50 1 1 0 0 0 0
....................................................................................................ATAGGCACTTTTTAGAGTGTG........................................................ 21 1 2 0.50 1 1 0 0 0 0
....................................................................................................ATTGGCACTTTTTGGAGTGTGC....................................................... 22 2 2 0.50 1 0 0 1 0 0
....................................................................................................ATTGGCACTTTTTATAGTGTGT....................................................... 22 2 2 0.50 1 0 0 1 0 0
....................................................................................................ATTGGCACTTTTTAGCGT........................................................... 18 1 3 0.33 1 0 0 1 0 0
....................................................................................................ATTGGCCCTTTTTAGAGTGTGA....................................................... 22 2 4 0.25 1 0 0 1 0 0
..............................................TACTCTGTGCAGTGCCT.................................................................................................................. 17 0 4 0.25 1 0 0 0 1 0
....................................................................................................ATTGGCACTTTTTGGAG............................................................ 17 1 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TATTGTGTCAGCCCCTCATAAACCCGTCTCAGGGGTGTAACTTGGTATGAGACACgtCACggAgtgAggtttCtCACggttAgtCCAtgtAAttttAtACtAACCgtgAAAAAtCtCACACCAttAAgtgtCgtACAggtCAgtgtACACCACCggACCACCCCTGTTACACCCACA

***********************************((((.(((((((((.((........)).)))))))))))))..................................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
..............................................................AGTGAGTTTTCCCACGGTTAGT............................................................................................. 22 2 2 0.50 1 1
.................................................................GAGGTTTTTCACGGTTA............................................................................................... 17 1 20 0.05 1 1

Generated: 09/01/2015 at 11:46 AM